Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0173 ATGGCAGTAGTCCGAGACCGCCGGCAGCTCAACCTCCGCCTCCCCTTGCCTGAAATCTCCGAGCGCCGTCCCCGATTCCCACTTCCCCTTCCTCCCACCAATCTCCCGTTCTCCTCCGGCGCCACTACCGCCGCCGACCTTGAGAAGATCGAAGTGATCGGCCACGGGAACGGCGGCACCGTCTACAAGGTCCAGCACAAGCGCACTGCAGCGAACTACGCGCTCAAGGTGGTCCACGGCGACTGCGACCCCACCGTCCGCCGTCAGGTGTTGCGGGAGATGGAGATCCTCCGATTTACGGACTCGCCGTTTGTGGTCCAGTGTCACGGCATCTTCCAGAAGCCCTCCGGTGACATCGCGATTTTAATGGAGTACATGGACGCCGGTACCTTAAAAACCCTCCTGGAAACCAAAGGCACTTTCTCGGAAGTGGATCTCGCTGGCGTCGCCGGTCAGGTGCTGAACGGCCTCAGTTACCTCCACAGCCACAAGATCATCCACAGAGACATCAAACCCGCAAATCTTTTGGTGAACGGGAACATGGAGGTGAAGATCGCCGATTTCGGAGTGAGCAAGATCATGCGCCGCATGCTCGACTCTTGCAACTCCTACGTGGGCACCTGCGCCTACATGAGCCCGGAGCGGTTCGACCCCGACTCCCACGGCTCCAATTACGACGGCTACTCCGGCGATATCTGGAGCTTAGGTCTCACCCTATTAGAACTCTACGTCGGTCACTTTCCCTTACTGCCGGCCGGACAGAAGCCGGACTGGGCAACACTCATGTGCGCCATATGCTTCGGCGAGGAGCCGGCGCTGCCAGAGGGCGTATCGGAGGAGTTCCGGAACTTCATCGAGTGTTGTCTACAGAAGGATTCAACAAAGAGGTGGACGGCGGCTCAGCTTCTATCGCATCCGTTCATCTGTAAACAATCTGTCATCTGA 945 0.5852 MAVVRDRRQLNLRLPLPEISERRPRFPLPLPPTNLPFSSGATTAADLEKIEVIGHGNGGTVYKVQHKRTAANYALKVVHGDCDPTVRRQVLREMEILRFTDSPFVVQCHGIFQKPSGDIAILMEYMDAGTLKTLLETKGTFSEVDLAGVAGQVLNGLSYLHSHKIIHRDIKPANLLVNGNMEVKIADFGVSKIMRRMLDSCNSYVGTCAYMSPERFDPDSHGSNYDGYSGDIWSLGLTLLELYVGHFPLLPAGQKPDWATLMCAICFGEEPALPEGVSEEFRNFIECCLQKDSTKRWTAAQLLSHPFICKQSVI* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0173 314 SUPERFAMILY Protein kinase-like (PK-like) 46 310 IPR011009 -
Vvi17g0173 314 SMART serkin_6 47 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0173 314 FunFam Mitogen-activated protein kinase 2 128 314 - -
Vvi17g0173 314 FunFam Mitogen-activated protein kinase kinase 32 123 - -
Vvi17g0173 314 Gene3D Phosphorylase Kinase; domain 1 38 121 - -
Vvi17g0173 314 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Vvi17g0173 314 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 44 310 - -
Vvi17g0173 314 ProSiteProfiles Protein kinase domain profile. 47 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0173 314 Pfam Protein kinase domain 48 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0173 314 CDD PKc_MAPKK_plant_like 45 308 - -
Vvi17g0173 314 Gene3D Transferase(Phosphotransferase) domain 1 122 313 - -
Vvi17g0173 314 ProSitePatterns Protein kinases ATP-binding region signature. 53 76 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0173 Vvi-Chr17 1537423 1538367 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0173 1 308 MAP Kinase Kinase Gene Family AT1G73500 66.667 6.48e-146 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vvi17g0173 Pkinase 1.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0173 K20604 - vvi:100254418 623.239