Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0168 ATGAGTTTTCAAGCTCGAAATGATCGGAGAGATAGAGCTAGATTTCCCAACCAAACCGGTAGGCAAGCATGGGTCCCTAGAGGATCTGCCCCTCACGCTGTGAATTCACACCCGAACCCGTCATCTGGTTTCAATTCCAATCTGAACGGGATTGGTGGGGACTCAAATTTCAGTTCCGCACCACCAGATGGTCCGAGTAGAGGAGGTTTTGCGTCAAGGAATTATGCAGCTAGACCTTCTAATCAGAGAAGGGAGAGGGTGGATGATCAGGAGGTGAAGGGGCCGAAGGACTTGAATTCAAATTTGCCGCAGCTTGTGCAGGAAATCCAAGAGAAATTGATGAAGGGGAGTGTTGAATGTATGATTTGTTATGATATGGTCAGGAGATCAGCTCCCATTTGGTCTTGCTCGAGCTGTTATTCAATTTTCCATTTGAATTGTATCAAGAAATGGGCCCGGGCGCCTACCTCTACTGATTTTTCTGTAGAGAAGAATCAGGGGGTCAACTGGCGATGCCCTGGATGTCAATCAGTGCAGCTCACAGCTTCAAAGGAGATTCGGTATGTTTGCTTCTGTGGAAAGAGGTCTGATCCGCCTTCTGATTTGTATTTGACGCCCCATTCTTGTGGAGAGCCTTGTGGGAAGCCACTCAATCGAGAGATTATAGGTTCTGGTGAGAGTAATGAGGATTTTTGCCCCCATGTCTGTGTCTTGCAATGCCACCCAGGTCCATGCCCTCCGTGTAAGGCTTTTGCACCGCCTCGGTTGTGCCCTTGTCGGAAGAAAATAATTACAACACGATGCTCTGATCGGAAATCTGTTCTTACTTGTGGTCAGCGTTGTGATAAACTCCTCGAATGTGGGCGTCACCGTTGTGAGCGCATGTGCCATGTTGGTGCTTGTGATCCTTGTCAGGTTCTGGTCAATGCCTCTTGCTTTTGCAAGAACACGGTGGAGGTTGTTCTTTGTGGGTCCATGGCTGTGAAGGGAGAACTAAAATCAGAGGATGGTGTTTTCTCATGTCGTTGGATCTGTGGAAAGAAGCTTTTCTGTGGAAATCACGATTGTGATGAAATTTGCCATCCAGGGCCATGTGGGGATTGCAACTTAATGCCAAGCAGGATTAGGACATGCTATTGCGGTAAAACATCATTGCAGGAGGAACGGCGTAGCTGTTTGGACCCAATTCCAACCTGTCTTCAGATCTGTGGCAAGCCCCTCCCTTGTGGAATGCACTTCTGTAAGGACACATGCCATGCTGGGGATTGTGCACCATGTTTGGTGCTTGTCAATCAAAAATGCCGTTGTGGATCAACATCTCGAACTGTAGAATGCTACAAAACCACGGCAGAGGAGAAATTTACCTGTGAGAAACCTTGTGGGCGGAAGAAGAACTGTGGAAGGCACCGTTGTAGTGAACGGTGCTGTCCTCTCTCTAATTCTGGCAATGTTCTCTTTGGTGATTGGGATCCGCACTTATGTTCAATGACATGTGGAAAGAAACTAAGGTGTGGACAGCACTCTTGTGAAAATCTTTGCCACAGTGGCCATTGCCCTCCTTGCCTTGAAACAATCTTTACTGATTTAACATGTGCATGTGGGAGAACTTCAATCGCTCCTCCATTGCCTTGTGGTACCCCCACTCCATCATGTCAGCACCCATGCTCAGTTCCTCAGCCATGTGGTCATTTATCTTCTCACAGCTGCCACTTTGGAGACTGCCCACCTTGTTCAGTTCCTATAGCCAAGGAGTGCATTGGTGGACATGTGGTTCTCAGGAACATCCCTTGTGGGTCAAGGGATATTAGATGTAACAAGCTTTGCGGCAAGACCAGGCAATGTGGTATGCATGCTTGTGGGAGAACTTGTCACCCTCCTCCTTGTGATTCTTCCTGTGCATCTGGCTCTGGTTTGAGGTCTTCATGTGGCCAGACATGTGGTGCTCCGAGGAGAGATTGCAGGCATACATGCACTGCCCCTTGTCACCCTTCATCTCCTTGTCCTGATTCAAGATGTAATTTCCCTGTCACAATCACTTGTTCTTGTGGCCGAATAAGTGCAACTGTTCCTTGTGATGCTGGAGGCAGCAGTGTGGGGTTTAATGGTGATACAGTCTCTGAAGCTTCCATTATCCAAAAGTTGCCAGTACCACTTCAACCTGTGGAAGCAAATGGCAGGAAAATTCCTCTTGGACAGAGGAAGCTTGCTTGTGATGATGAATGTGCAAAACAGGAACGGAAACGAGTTCTTGCAGATGCTTTTGATATCACCCCCCCAAACTTGGATGCCCTTCATTTTGGTGAGACTTCTGTTGTTTCTGAATTGCTTGCAGATCTTTTTAGGCGTGATCCAAAGTGGGTGTTGTCTGTGGAAGAAAGATGCAAGTTTTTGGTCCTAGGGAAAACCAGAGGAACTACCAGCAGTCTTAGGGTTCACGTTTTCTGTCCAATGCTGAAGGAAAAGAGAGATGCTGTAAGGCTGATAGCTGAGAGGTGGAAGCTTTCAGTTAATTCTGCTGGGTGGGAGCCAAAGCGTTTTATTGTTGTTCATGTTACGCCCAAATCCAAAGCCCCAGCTCGTGTGCTTGGCGCTAAGGGTTCCACCCCCTTAAATGTGTTAAATCCTCCGGTTTTTGATCCATTGGTAGATATGGATCCCAGGCTTGTTGTTTCTTTACTTGATTTGCCAAGGGACGCAGATATAAGTGCATTGGTTCTGAGGTTTGGTGGGGAGTGTGAATTAGTTTGGTTGAATGACAAGAATGCGCTGGCCGTGTTTAGTGATCCAGCCCGAGCAGCAACTGCGATGAGGAGGTTAGATCATGGATCAGTGTATCATGGTGCTGTTGTGATCCCTCAAAATGGCATTGCACCAGTGGCTTCACAAGGTGCCAATGCCTGGGGAGGATCAGCAGGGGGAATGGCCAAGGAGGGCCGTAATCAATGGAAGAAGGCAGTGGTTCAGGAGTCTGGTTGGAGTGAGAGTTCCTGGGGTGGTGAAGACTGGTCAGCTGGTTCTGTGGATCTGCAGGCATCTGTTTGGAAAGGGAAGGAATCCCCCATTGTTGCTTCTGTAAACCGATGGAATGTTTTAGAGCCTGAATTGGTTTCAAGCTCATCTACCTCTTCTGTCAAAACCGAGGATTCCGGAAAAAGAGTGGGAAATCAATCTGTGCCCGGTTTGGAACCAAGTTCAAGTCATTCTAATTCAGCAGAGACAGAAGGAGATACAAGCGAAGCAGATGCATCAGAAGTAGTAGATGACTGGGAAAAGGCTTATGAATGA 3285 0.4767 MSFQARNDRRDRARFPNQTGRQAWVPRGSAPHAVNSHPNPSSGFNSNLNGIGGDSNFSSAPPDGPSRGGFASRNYAARPSNQRRERVDDQEVKGPKDLNSNLPQLVQEIQEKLMKGSVECMICYDMVRRSAPIWSCSSCYSIFHLNCIKKWARAPTSTDFSVEKNQGVNWRCPGCQSVQLTASKEIRYVCFCGKRSDPPSDLYLTPHSCGEPCGKPLNREIIGSGESNEDFCPHVCVLQCHPGPCPPCKAFAPPRLCPCRKKIITTRCSDRKSVLTCGQRCDKLLECGRHRCERMCHVGACDPCQVLVNASCFCKNTVEVVLCGSMAVKGELKSEDGVFSCRWICGKKLFCGNHDCDEICHPGPCGDCNLMPSRIRTCYCGKTSLQEERRSCLDPIPTCLQICGKPLPCGMHFCKDTCHAGDCAPCLVLVNQKCRCGSTSRTVECYKTTAEEKFTCEKPCGRKKNCGRHRCSERCCPLSNSGNVLFGDWDPHLCSMTCGKKLRCGQHSCENLCHSGHCPPCLETIFTDLTCACGRTSIAPPLPCGTPTPSCQHPCSVPQPCGHLSSHSCHFGDCPPCSVPIAKECIGGHVVLRNIPCGSRDIRCNKLCGKTRQCGMHACGRTCHPPPCDSSCASGSGLRSSCGQTCGAPRRDCRHTCTAPCHPSSPCPDSRCNFPVTITCSCGRISATVPCDAGGSSVGFNGDTVSEASIIQKLPVPLQPVEANGRKIPLGQRKLACDDECAKQERKRVLADAFDITPPNLDALHFGETSVVSELLADLFRRDPKWVLSVEERCKFLVLGKTRGTTSSLRVHVFCPMLKEKRDAVRLIAERWKLSVNSAGWEPKRFIVVHVTPKSKAPARVLGAKGSTPLNVLNPPVFDPLVDMDPRLVVSLLDLPRDADISALVLRFGGECELVWLNDKNALAVFSDPARAATAMRRLDHGSVYHGAVVIPQNGIAPVASQGANAWGGSAGGMAKEGRNQWKKAVVQESGWSESSWGGEDWSAGSVDLQASVWKGKESPIVASVNRWNVLEPELVSSSSTSSVKTEDSGKRVGNQSVPGLEPSSSHSNSAETEGDTSEADASEVVDDWEKAYE* 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0168 1094 SUPERFAMILY RING/U-box 109 179 - -
Vvi17g0168 1094 ProSiteProfiles Zinc finger RING-type profile. 120 176 IPR001841 -
Vvi17g0168 1094 ProSiteProfiles Zinc finger PHD-type profile. 117 178 IPR019787 -
Vvi17g0168 1094 Coils Coil 1086 1094 - -
Vvi17g0168 1094 SMART znfxneu3 466 496 IPR000967 GO:0005634|GO:0008270
Vvi17g0168 1094 SMART znfxneu3 614 634 IPR000967 GO:0005634|GO:0008270
Vvi17g0168 1094 SMART znfxneu3 351 370 IPR000967 GO:0005634|GO:0008270
Vvi17g0168 1094 SMART znfxneu3 409 428 IPR000967 GO:0005634|GO:0008270
Vvi17g0168 1094 SMART znfxneu3 653 674 IPR000967 GO:0005634|GO:0008270
Vvi17g0168 1094 SMART znfxneu3 504 523 IPR000967 GO:0005634|GO:0008270
Vvi17g0168 1094 SMART znfxneu3 287 306 IPR000967 GO:0005634|GO:0008270
Vvi17g0168 1094 SMART znfxneu3 561 579 IPR000967 GO:0005634|GO:0008270
Vvi17g0168 1094 SMART znfxneu3 232 250 IPR000967 GO:0005634|GO:0008270
Vvi17g0168 1094 MobiDBLite consensus disorder prediction 1036 1094 - -
Vvi17g0168 1094 CDD NF-X1-zinc-finger 399 447 - -
Vvi17g0168 1094 MobiDBLite consensus disorder prediction 79 95 - -
Vvi17g0168 1094 CDD NF-X1-zinc-finger 494 546 - -
Vvi17g0168 1094 CDD NF-X1-zinc-finger 642 691 - -
Vvi17g0168 1094 CDD NF-X1-zinc-finger 551 599 - -
Vvi17g0168 1094 MobiDBLite consensus disorder prediction 1 16 - -
Vvi17g0168 1094 MobiDBLite consensus disorder prediction 34 62 - -
Vvi17g0168 1094 MobiDBLite consensus disorder prediction 1036 1076 - -
Vvi17g0168 1094 Pfam NF-X1 type zinc finger 646 671 IPR000967 GO:0005634|GO:0008270
Vvi17g0168 1094 Pfam NF-X1 type zinc finger 234 249 IPR000967 GO:0005634|GO:0008270
Vvi17g0168 1094 Pfam NF-X1 type zinc finger 287 305 IPR000967 GO:0005634|GO:0008270
Vvi17g0168 1094 Pfam NF-X1 type zinc finger 409 426 IPR000967 GO:0005634|GO:0008270
Vvi17g0168 1094 Pfam NF-X1 type zinc finger 351 368 IPR000967 GO:0005634|GO:0008270
Vvi17g0168 1094 Pfam NF-X1 type zinc finger 614 632 IPR000967 GO:0005634|GO:0008270
Vvi17g0168 1094 Pfam NF-X1 type zinc finger 466 477 IPR000967 GO:0005634|GO:0008270
Vvi17g0168 1094 Pfam NF-X1 type zinc finger 567 578 IPR000967 GO:0005634|GO:0008270
Vvi17g0168 1094 Pfam NF-X1 type zinc finger 504 521 IPR000967 GO:0005634|GO:0008270
Vvi17g0168 1094 CDD NF-X1-zinc-finger 277 325 - -
Vvi17g0168 1094 CDD RING-CH-C4HC3_NFX1-like 119 176 - -
Vvi17g0168 1094 CDD NF-X1-zinc-finger 341 384 - -
Vvi17g0168 1094 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 81 999 IPR034078 GO:0003700
Vvi17g0168 1094 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0168 Vvi-Chr17 1498508 1501792 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Vvi17g0168 zf-NF-X1 1.1e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0168 K12236 - vvi:100268010 2316.58