Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0164 ATGTGCACCAGAGGCCATTGGAGGCCAGCTGAGGATGAGAAGCTCCGGGAATTGGTGGAAAGGCATGGACCGCATAACTGGAACGCCATAGCTGAAAAGCTCCCTGGAAGATCAGGGAAGAGCTGTAGGTTGAGATGGTTCAATCAGTTAGACCCCAGAATCAACCGAGCCCCGTTTACCGAAGAGGAAGAAGAACGGCTTCTCGCTTCTCACCGGATCCATGGGAACCGATGGGCTGTTATTGCCAGGCTTTTCCCCGGCCGGACTGATAACGCAGTGAAGAATCACTGGCATGTGATCATGGCACGGAGATGCAGGGAGAAATCCAAGTTTTATGCTAAGAGAGCCGCCCAATCTTGGATTAACGAGAGAAAGTCCATATCAAAACCAGATAGGCAGCAGATGATCGGCTGCGACACAAGAAACCTCTCTTCCTATGTCGAGAATTGCTATGAAAACATGATTCATTGTACAAAGATGCTTGAAGATAGAACTCAACCGGTCGAGTTTTATGATTTTCTCAATGTGAATACTGACTCTAACAGAAGCGAAGTGATAGACCATGCAAGGAGAGATGATGAAGAGGTGGAACAGGAAGCCATGGATCATCAGAGCAAGGCTGGTGTTCCATTCATAGATTTTCTATCAGTTGGAAGCTCTTCTTGA 666 0.476 MCTRGHWRPAEDEKLRELVERHGPHNWNAIAEKLPGRSGKSCRLRWFNQLDPRINRAPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCREKSKFYAKRAAQSWINERKSISKPDRQQMIGCDTRNLSSYVENCYENMIHCTKMLEDRTQPVEFYDFLNVNTDSNRSEVIDHARRDDEEVEQEAMDHQSKAGVPFIDFLSVGSSS* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0164 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Vvi17g0164 221 FunFam MYB transcription factor 4 55 - -
Vvi17g0164 221 Gene3D - 57 134 - -
Vvi17g0164 221 PANTHER MYB PROTEIN-RELATED 4 148 - -
Vvi17g0164 221 Coils Coil 186 206 - -
Vvi17g0164 221 ProSiteProfiles Myb-like domain profile. 4 50 IPR001005 -
Vvi17g0164 221 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Vvi17g0164 221 SMART sant 55 103 IPR001005 -
Vvi17g0164 221 SMART sant 3 52 IPR001005 -
Vvi17g0164 221 CDD SANT 58 98 IPR001005 -
Vvi17g0164 221 Pfam Myb-like DNA-binding domain 57 99 IPR001005 -
Vvi17g0164 221 Pfam Myb-like DNA-binding domain 4 50 IPR001005 -
Vvi17g0164 221 Gene3D - 4 55 - -
Vvi17g0164 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Vvi17g0164 221 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Vvi17g0164 221 CDD SANT 7 48 IPR001005 -
Vvi17g0164 221 FunFam MYB transcription factor 57 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0164 Vvi-Chr17 1475025 1475958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0164 1 221 MYB Transcription Factor Family AT1G17950 55.466 6.83e-86 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi17g0164 Myb_DNA-binding 3.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0164 K09422 - vvi:100257738 466.848