Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0162 ATGTTAGGCTGCAGCAACAGCGATAATAACAACAACTCTTCTGCTGAGCCTTTTGCTAGCTTGGAAAATGGAAGTAATAGTAAGAGGAAGCGGCGGCCGGCGGGGACTCCAGATCCAGACGCGGAGGTGGTGTCTCTTTCGCCCAAAACTCTATTGGAATCGGATCGATACATTTGTGAGATCTGCAACCAGGGGTTTCAGAGAGACCAGAACCTTCAGATGCACCGGCGACGCCATAAGGTGCCATGGAAGCTGCTGAAGAGGGAGACGCCGGTGGTGAGGAAGCGGGTGTTTGTGTGCCCGGAGCCCAGCTGCTTGCACCATGACCCCTGCCACGCACTGGGTGATCTGGTTGGAATCAAGAAGCACTTCAGAAGAAAGCACAGTAATCACAAGCAGTGGGTCTGTGAGAAATGCAACAAGGGCTATGCTGTTCAATCGGATTACAAAGCCCACCTCAAAACCTGCGGCACCAGAGGCCATTCTTGCGACTGCGGCCGTGTTTTCTCCAGAGTCGAGAGCTTCATTGAACATCAAGATGCTTGCAATATGGGTCACCTACGGCCGGAATCGCAGTTGCTGCAGCCGGCGGCGTGCTTGTCTCGAACTGCCTCTAGCCCCAGCCCATCTAGTGAGACCAATTTCAGTGTACCTCCTTGGTCTGGTTTGATGACGCCGAGGCCAGTGGATTCCATCTTCTTGACCTCTGATGGAGATAATAATAACAATAATCCTCCCAAGAAAGCACATTACCATAATCTGGAGCTTCAGCTGTTAACCACACCGAATCCCCTCGTCGCCTTGGCTTCCCCTAAAGCGGATGAAAACCATTCAACTCAGTTGCAGCTGTCGATCGGGTCGAGCGATTTCAATGAGAAAAATGAATCAAGCATTATCAATCTGATCAACAAGGAATATTCGGCACCCGCAAGGTGTCCTAGGGAGTGCAATACCAGTGAGAAAGCTACGTTTGGAGCGGCGAGGCTTAAGGAAGAGGCGCGCGAGCAGTTAAGGCTGGCCATGGAGGAGAAGGTCTATGCAGAAGAGGCAAGGCAGCAGGCAAAGCGACAGATTGAGCTAGCCGATAAAGAATTTACCCATGCGAAGAGAATCAGGCAGCAGGCACAAGCGGAATTGGACAAGGCACAAGCACTAAAAGAACATGCCAGAAAGCAAATCAACTCAACTATCCTCCAAATCACTTGTCATGCCTGCAAGCAACAATTCCGAACGAGGACTGCAGGAAACGTCGCACCACCGGATGAGAACTCCCTGGTACTTAGTTACATGTCATCTGCCATAACCGAGGGCGAAGTAGTAGAGAACAATCATCATCGATCCGTTCGAGCTAAAACTACTAACCCATAG 1368 0.508 MLGCSNSDNNNNSSAEPFASLENGSNSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYICEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCNKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRPESQLLQPAACLSRTASSPSPSSETNFSVPPWSGLMTPRPVDSIFLTSDGDNNNNNPPKKAHYHNLELQLLTTPNPLVALASPKADENHSTQLQLSIGSSDFNEKNESSIINLINKEYSAPARCPRECNTSEKATFGAARLKEEAREQLRLAMEEKVYAEEARQQAKRQIELADKEFTHAKRIRQQAQAELDKAQALKEHARKQINSTILQITCHACKQQFRTRTAGNVAPPDENSLVLSYMSSAITEGEVVENNHHRSVRAKTTNP* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0162 455 FunFam protein indeterminate-domain 12-like 36 104 - -
Vvi17g0162 455 Coils Coil 330 392 - -
Vvi17g0162 455 CDD ATP-synt_Fo_b 326 401 - -
Vvi17g0162 455 Gene3D Classic Zinc Finger 113 183 - -
Vvi17g0162 455 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Vvi17g0162 455 MobiDBLite consensus disorder prediction 201 220 - -
Vvi17g0162 455 MobiDBLite consensus disorder prediction 1 46 - -
Vvi17g0162 455 MobiDBLite consensus disorder prediction 201 222 - -
Vvi17g0162 455 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Vvi17g0162 455 MobiDBLite consensus disorder prediction 1 24 - -
Vvi17g0162 455 Pfam Zinc-finger of C2H2 type 57 75 - -
Vvi17g0162 455 SMART c2h2final6 134 161 IPR013087 -
Vvi17g0162 455 SMART c2h2final6 98 128 IPR013087 -
Vvi17g0162 455 SMART c2h2final6 57 79 IPR013087 -
Vvi17g0162 455 SUPERFAMILY beta-beta-alpha zinc fingers 56 154 IPR036236 -
Vvi17g0162 455 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 15 404 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0162 Vvi-Chr17 1437045 1439005 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0162 23 439 C2H2 Transcription Factor Family AT2G01940 54.713 4.57e-147 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi17g0162 zf-met 0.026 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0162 K25871 - vvi:100260988 904.82