Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0161 ATGGATGGAGATGGTGGTTTGAATATGCGTAATTGGGGTTACTATGAACCAGCAGCATCAAACCTTAAGGGGCACCTTGGCCTACAGCTTATGTCCACTGTGCCTGATAAACCTCTTATCGGTGCCCGCAATTCAGCCATCTTGGCTAGTACCAATGGGGCATTTCACCAGAGGGATTGTGGGGTTTCACAAGCCTTGCCGATCCCCATGGAGTACATGAGGAATGCTTGGATTAACCAGAGAGAAAAATTTCTCAATGTGTTACCTGGAAATCCCAATTTCTCTGTTTTAGCTGAACCCTCTAGGGCTCATCCAATGCAAATGCTCCAGCAACCTGATTCTACAAAGGATGAAATGGTGGCCCAAGTTGAAGAAGAGGCTGGTGTTGAGAAGGATAATGGTCCTTTGAAGAAAAGAGCTGGTGGAAAAACCCAAAAATCTCCCAAAGCAAAGAAGCCTAAGCGGGCCCCTAAGGTGCCAAAGGATGAGAGTAGTCCGTCTGTTCAACGAGCAAAGCCTGGGAAGAAAAATACCGAAGTGGTCATAAATGGGATAGATATGGATATTTCTGGCATTCCGATTCCAGTATGCTCATGCACAGGAGCTCCTCAGCAGTGTTATCGGTGGGGCTCTGGTGGGTGGCAATCTGCTTGCTGTACCACAGGTATGTCTATATACCCTCTGCCAATGAGTACTAAAAGGCGTGGTGCAAGGATAGCTGGGAGAAAAATGAGCTTGGGAGCATTTAAGAAGGTCTTGGAGAAACTCGCTGCTGAAGGTTACAACTTTTCTAATCCAATCGATTTGAGGACTCACTGGGCGAAACATGGTACCAACAAATTTGTCACTATCAGGTAG 858 0.465 MDGDGGLNMRNWGYYEPAASNLKGHLGLQLMSTVPDKPLIGARNSAILASTNGAFHQRDCGVSQALPIPMEYMRNAWINQREKFLNVLPGNPNFSVLAEPSRAHPMQMLQQPDSTKDEMVAQVEEEAGVEKDNGPLKKRAGGKTQKSPKAKKPKRAPKVPKDESSPSVQRAKPGKKNTEVVINGIDMDISGIPIPVCSCTGAPQQCYRWGSGGWQSACCTTGMSIYPLPMSTKRRGARIAGRKMSLGAFKKVLEKLAAEGYNFSNPIDLRTHWAKHGTNKFVTIR* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0161 285 MobiDBLite consensus disorder prediction 107 179 - -
Vvi17g0161 285 PANTHER - 1 285 IPR010409 -
Vvi17g0161 285 MobiDBLite consensus disorder prediction 118 139 - -
Vvi17g0161 285 SMART GAGA_bind_2 1 285 IPR010409 -
Vvi17g0161 285 Pfam GAGA binding protein-like family 1 285 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0161 Vvi-Chr17 1419142 1419999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0161 1 285 BBR or BPC Transcription factor family AT2G01930 53.795 1.63e-99 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vvi17g0161 GAGA_bind 2e-111 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0161 - - vvi:100255909 571.237