LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi17g0154	ATGGCGGCTGGAAGAGTCGGTGTTTCCAGGAGGAATGATTTTTACAAGTACTCCAAAAAGGAACATGATTATCATAGAAACCCTAATCGTGGTGTGGAGTTGAGTCGAGATCGCGATCGGGGCGTTACGGGTAGGAATGGGTTCGATTCGTTGTCGAGGGTGAGCAGTGATGTTGGTGGTCGTCGTAATGTGTTCCGTGTTAGGATCGGTGAAAAAGAGCTTGGTAAGTTATCCTCTGGGCGTAAAATTGGATCTCAGATGGTGGATAGTGAGACTTCTGAGGTTGATAATGGGGTTAAGATGAACTGTGATAGGAAGAGGAAGTTTTCGCCTATTGTGTGGAACGCGGAGAAGGAAGTGAGGATTTCGTCTAAGAATGGGGTTGTATCTATGAGCACTGCGTTGTCTCATCCTAAATTGTTGGGTGAAGTTGTTTCAGATGAGGTTGTTGCGGTGCACAGTGATGCTGATCGGATTCAGTGCTTGCAGTCTTCTATTATAGAGTCCCATGTGGTGAGCGGCTCTGCTGAAACTGCTGTTGTGGAGCCTCCTGCATGTTTGTCTTCTCTGATGCCTGGTCAGCGCTGTGGGAGGAGTGGTGAAGAAGTGGAGCAGCTGGAGGAGGAAGTTGTTTGTTCCTGGAATATCGCCACATCTAGGTGGGCATCTGAAAGTGATTCTCCAAGAGAAAAATGTTTCTCTGATAATGGAAATATGCCGAAGCGAAGTAAAATGAGTTCTCCTATGGATTCACCTTCAAGAACTCTATTAGATGGAAAGGCATCCAGTCCTGAGAGTGGGGAGTTTCAAAGAGAAGACTCAGAAGGAGATAGGGCTGAATCTTCTGTAACCGATGAAGTTGGTATTTTCATAGGGCGTGCTGGTGGAGAAGAATGTTCTGGAAATGAATTAGACAACAATGATTGTATGGAAATCAATGACGGTGAGGATGAGACTCGTGTTGATTATCAGTCGGGCTTGGATTCTGAGGATGGTAATGAGGTTCATCTTCCAGTAGAGTCGCTGCCTCCCCCACAAAGGAGTGTAAACATGCTTCAGGAATGTAGAAGTGTGTTTGAATATGATAGGCTCAATAAAATAAACGAAGGTGCATATGGTGTAGTGTATAGAGCCAGGGACAAAAAAACGGGGGAAATCGTGGCATTGAAGAAAATGAAAATGAAGATAGCAGAAACAGATGGTTTCCCTATGTCAGCTTTGAGGGAAATAAACATTCTCTTGTCTTTTCATCACCCCTCGATTGTGGATGTTAAAGAAGTTGTTATGGATGACTTTGGTACTGTTTACATGGTTATGGAGTACATGGAACATGACCTTAAGCGGCTGATTGAATTGAAGAAACGGTCTTTCTCTTTAAGTGAAGTTAAAGGCCTGATGCTACAGCTGTTGGAGGGTGTCCAGCATCTTCATCATAATTGGGTGCTACACAGGGATTTGAAGACATCAAATCTTCTTTTGAACGACAATGGTGAGTTGAAAATCTGTGACTTTGGGTTGTCTCGCCAGTATGCAAGCCCATCTAAACCATATACTCAGTTGGTGGTCACTCTATGGTACAGGGCTCCTGAACTTCTGCTGGGAACAAAACAATACTCAACGGCAATTGACATGTGGTCTGTGGGTTGTATAATGGCTGAACTTTTAGCGAAAGAGCCACTATTCCAAGGGAAAACTGAATTGGATCAGCTTGACAAGATTTTTAAGATTCTTGGAACACCCAATAAAACGATTTGGCCAGGGGTTTCCAATTTGCCTGGATTCAAAGCCAACTTTGTCAAGCAACCGTATAATCTGTTGAGGAAGAAATTTCCAGCTACATCTTTCACTGGATTTCCAGTTCTCTCTGATTCAGGGTTTGACCTGTTGAGCAAACTTCTAACCTACGACCCTGAGAAGCGAATAACCGCAGAAGCTGCATTGGACCATGACTGGTTTCATGAAGTACCCCTTCCCAAATGTGAAGGTTTCATGCCTTTTTTCCCTGCTCAACATGCTCAGGACAGAGAATAA	2031	0.4402	MAAGRVGVSRRNDFYKYSKKEHDYHRNPNRGVELSRDRDRGVTGRNGFDSLSRVSSDVGGRRNVFRVRIGEKELGKLSSGRKIGSQMVDSETSEVDNGVKMNCDRKRKFSPIVWNAEKEVRISSKNGVVSMSTALSHPKLLGEVVSDEVVAVHSDADRIQCLQSSIIESHVVSGSAETAVVEPPACLSSLMPGQRCGRSGEEVEQLEEEVVCSWNIATSRWASESDSPREKCFSDNGNMPKRSKMSSPMDSPSRTLLDGKASSPESGEFQREDSEGDRAESSVTDEVGIFIGRAGGEECSGNELDNNDCMEINDGEDETRVDYQSGLDSEDGNEVHLPVESLPPPQRSVNMLQECRSVFEYDRLNKINEGAYGVVYRARDKKTGEIVALKKMKMKIAETDGFPMSALREINILLSFHHPSIVDVKEVVMDDFGTVYMVMEYMEHDLKRLIELKKRSFSLSEVKGLMLQLLEGVQHLHHNWVLHRDLKTSNLLLNDNGELKICDFGLSRQYASPSKPYTQLVVTLWYRAPELLLGTKQYSTAIDMWSVGCIMAELLAKEPLFQGKTELDQLDKIFKILGTPNKTIWPGVSNLPGFKANFVKQPYNLLRKKFPATSFTGFPVLSDSGFDLLSKLLTYDPEKRITAEAALDHDWFHEVPLPKCEGFMPFFPAQHAQDRE*	677

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi17g0154	676	MobiDBLite	consensus disorder prediction	19	44	-	-
	Vvi17g0154	676	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	481	493	IPR008271	GO:0004672\|GO:0006468
	Vvi17g0154	676	Pfam	Protein kinase domain	361	652	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi17g0154	676	PANTHER	CELL DIVISION PROTEIN KINASE	360	658	-	-
	Vvi17g0154	676	CDD	STKc_CDC2L1	355	652	IPR045267	GO:0004674\|GO:0005524\|GO:0006468
	Vvi17g0154	676	MobiDBLite	consensus disorder prediction	239	260	-	-
	Vvi17g0154	676	SMART	serkin_6	361	652	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi17g0154	676	MobiDBLite	consensus disorder prediction	225	285	-	-
	Vvi17g0154	676	ProSiteProfiles	Protein kinase domain profile.	361	652	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi17g0154	676	Gene3D	Transferase(Phosphotransferase) domain 1	444	664	-	-
	Vvi17g0154	676	FunFam	cyclin-dependent kinase G-2 isoform X1	346	443	-	-
	Vvi17g0154	676	MobiDBLite	consensus disorder prediction	19	48	-	-
	Vvi17g0154	676	MobiDBLite	consensus disorder prediction	265	282	-	-
	Vvi17g0154	676	SUPERFAMILY	Protein kinase-like (PK-like)	356	658	IPR011009	-
	Vvi17g0154	676	FunFam	Cyclin-dependent kinase G-2	444	676	-	-
	Vvi17g0154	676	Gene3D	Phosphorylase Kinase; domain 1	346	443	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi17g0154	Vvi-Chr17	1342708	1345628	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi17g0154	356	671	Core Cell Cycle Gene Families	AT5G10270	44.880	7.14e-84	271

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-PITSLRE	Vvi17g0154		Pkinase	1.6e-76	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi17g0154	K08818		-	vvi:100250978	1357.43