Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0152 ATGGCGGAAATGAATGGGAACCACTGGATCGATCCGAAGAGCGGGTTCTCCCCTACAACCAAGACCTACCATAGCCTCCGACCTCCGGTACCTTTTCCGCCGAAGCACCGCCCTCTTTCCCTCGCCGAGTACGTCATCTCCCTCCTCCGCTCCGCCCCTGACTCACCGCTCGAAACCACCAACGTTCTTATCGACGCTTCCTCCGACTACCGCCTCTCGTATTCTCAGTTCCTCCGGCAAGTCCAATCCTTGGCCGCCTCTCTTCAGCGCATCACCGGCCTTTCCAAAGGCGATACTGCTTTCATTCTCTGCCCTCCTTCTCTCAAAATCCCTGTTATCTACTTTTCTCTCCTCTCTCTCGGCGTCACCATTTCTCCCACCAATCCGCTCGGCTCCGACTCCGAAGTTTCTCACCAGATTCACCTCTGCAAACCTGCGATTGCATTCGCTTCTTCGAAAACTGCTCACAAGCTGCCGAGCCTGCGGCTCGGCACGGTGCTTGTTGATTCGCTGGAGTTCGACTCTATGATGACAGAGAATGGAGCAGGTTATGGTAAACGAGTGGAGGTGAGTCAGTCTGACCCGGCCGCGATTCTCTATTCGTCCGGGACCACGGGACGAGTGAAGGGAGTGTTGTTGACCCACCGGAACCTGATCACGCTTATCGCTGGATTCCACCATAACCGGCTAGAGAAAGAGGAGGATGGGCCGCGCCCAGTGTCGCTGTTCACGCTGCCGCTATTTCACGTGTTCGGATTTTTCATGCTTGTGAGGGCAGTCTCGTTGGCGGAGACCTTGGTTCTGATGGAGAGGTTTGATTTCGAGAATATGTTGAAGGCCGTAGAGAAGTACCGAATCACGTATATGCCGGTGTCGCCGCCCCTTGTGGTGGCGCTCGCAAAGTCGGAGTTCGTCGGCAAGTACGACCTTAGCTCGCTTCAGTTGCTTGGATCAGGCGGGGCGCCGCTGGGAAAGGAGGTTTCCGAGCGGTTCTCCGCACGATTCCCCAATGTACAGATGGTACAGGGATATGGTTTGACTGAAAGTGGGGGAGGGGCAGCAGGGATGGCAGACCTTGATGAGGCTAAGCGGCATGGATCTGTTGGTCGCCTAATGCATGATATGGAAGCCAAGATAGTTGATCCTAAAACTGGAGAGGCCTTACCACCTGGCCAGCAAGGGGAGCTGTGGTTGCGCGGTCCAACAATCATGAAAGGTTATGTAGGAGATGATGAGGCAACTGCTGCAACCTTGGATCAAGAGGGCTGGTTAAAAACTGGCGATCTTTGTTACTTTGACTCTGATGGATTCCTATTCATTGTTGATAGGTTAAAGGAATTGATCAAATACAAAGCATATCAGGTTCCTCCTGCTGAGTTGGAACATTTACTGCAATCCAATCCAGAAATTGCTGATGCTGCTGTAATCCCGTATCCTGATGAAGAAGCAGGACAGATACCAATGGCCTTTGTGGTGAGAAAACCGGGAAGCAGCATCACTGAGGCTCAAGTTATGGAATTCATTGCAAAACAGGTTGCACCATACAAGAAGATACGGCGCGTAGCTTTTGTCAACTCCATTCCAAAATCTCCTGCAGGAAAGATCTTACGAAGAGAACTGGTCAATCATGCGCTCTCTAAACCTAGACTATGA 1653 0.5221 MAEMNGNHWIDPKSGFSPTTKTYHSLRPPVPFPPKHRPLSLAEYVISLLRSAPDSPLETTNVLIDASSDYRLSYSQFLRQVQSLAASLQRITGLSKGDTAFILCPPSLKIPVIYFSLLSLGVTISPTNPLGSDSEVSHQIHLCKPAIAFASSKTAHKLPSLRLGTVLVDSLEFDSMMTENGAGYGKRVEVSQSDPAAILYSSGTTGRVKGVLLTHRNLITLIAGFHHNRLEKEEDGPRPVSLFTLPLFHVFGFFMLVRAVSLAETLVLMERFDFENMLKAVEKYRITYMPVSPPLVVALAKSEFVGKYDLSSLQLLGSGGAPLGKEVSERFSARFPNVQMVQGYGLTESGGGAAGMADLDEAKRHGSVGRLMHDMEAKIVDPKTGEALPPGQQGELWLRGPTIMKGYVGDDEATAATLDQEGWLKTGDLCYFDSDGFLFIVDRLKELIKYKAYQVPPAELEHLLQSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSSITEAQVMEFIAKQVAPYKKIRRVAFVNSIPKSPAGKILRRELVNHALSKPRL* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0152 550 Pfam AMP-binding enzyme 64 450 IPR000873 -
Vvi17g0152 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 17 542 - -
Vvi17g0152 550 FunFam 4-coumarate--CoA ligase 2 446 547 - -
Vvi17g0152 550 Gene3D - 446 546 IPR045851 -
Vvi17g0152 550 ProSitePatterns Putative AMP-binding domain signature. 198 209 IPR020845 -
Vvi17g0152 550 FunFam Long-chain-fatty-acid--CoA ligase FadD 29 445 - -
Vvi17g0152 550 SUPERFAMILY Acetyl-CoA synthetase-like 30 546 - -
Vvi17g0152 550 Gene3D - 30 445 IPR042099 -
Vvi17g0152 550 Pfam AMP-binding enzyme C-terminal domain 459 534 IPR025110 -
Vvi17g0152 550 CDD 4CL 33 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0152 Vvi-Chr17 1326721 1332151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0152 1 545 Monolignol Biosynthesis Gene Families AT5G63380 60.360 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0152 K01904 - vvi:100268159 1075.85