Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0144 ATGGGCTATTTGAGTTTGCTTTTGCTGATATTTCTTTCATGGAATTTCTTCATCTTGGGTACCCATCAACTGCAATCCTCTCAAACCCAAGTGCTTCTTCAGCTAAGAAAGCAGCTTGAGTATCCAGTTCAGTTAGAGATTTGGAAGGACCATACCTTAGATTTCTGTTATTTATCATCTTCCACACAAGTAAACATCACCTGCCAAGACAGCTTTGTCACAGGGATCAAGATTATGGGTGATAAGACTGTTAAGGATAGTAATTTTGATGGGTTTGCCATTCCAACTGTAACTCTATCTGGGGCCTTCTCTATGGATTCTTTTGTGACAACTCTGGCCAGGCTAACCAGCTTGAGAGTTCTTAGCCTGGTGTCTTTGGGCATTTGGGGTCCACTGCCAGACAAAATTCATCGGTTATCTTCACTTGAATACTTGGATTTGAGTTCCAATTTTCTCTTTGGTTCAGTTCCTCCTAAGATCTGTACAATGGTGAAGCTCCAAGCTCTTTCACTTGATGGCAATTACTTCAATGGTACAGTGCCTGATTGCTTGGATTCACTATCGAATCTAACAGTTCTGAGCCTGGGGAACAATCGTTTGAATGGTCCATTCCCAGCTTCAATTCAGAGGATCGCCACTCTCAGTGATCTTGACTTCTCAGGCAATGAGATATCCGGAAAATTGCCTGATCTAAGCAGGTTAACTAGTCTTCATTTGCTGGATATGAGTAAAAATAAATTGGATTCCAAACTACCTGCTCTGCCCAAAGGGGTGGCCATGGCTTTCCTCAGCAACAACTCTTTCATGGGTGAGATTCCTCAGCAATATAGCCGACTAGTTCAACTTCAACACCTTGATTTGTCATTCAATTTTCTCACAGGAACACCCCCAGAAGCACTTTTCTCTTTGCCCAACATCAGTTACTTGAATTTGGCATCAAACACTTTGAGTGGATCGCTTTCCAACCATATACACTGCAGCAGTGAGCTTAGCTTTGTCGACATATCAAATAATAAGTTAACAGGTGGATTGCCTTCATGTTTGAGCACTGCATTAGATAAGAGAGTTGTTAATTCTGATGGGAATTGTCTGTCCATCGGTTTCCAGCACCAGCATCCTGACTCTTACTGCATGGCAGTCCCAGTAAAGAAGAAAGAATCGAGAAGCAAAGATATGGGAATATTAGTGGCTGTCATTGGGGGGGTCTTTGTTGCTACTCTGCTTCTGGTTTTTGGCTGTTTCTTTGTGTGTAAAAGATGTTGTTCACGGAGTATATCAGAGCAGCATTTATTGCATAAGACCGTGCAAGAGAACTCGACAACTGGGTTATCCTCTGAGCTTCTAACAAATGCAAGGTTTATCCCTCAAGTAGCCAAATTGGGAACAGAAGGTGTTCCAGTGTGCCGGGTGTTTTCTTTGGAAGAGTTAAGGGAAGCTACAAACAACTTTGATCGGTCTACCTTTATGGGTGATGGTTCAAATGGGAAGCTTTACAAGGGACGATTGGAGAATGGAACCCAAGTAGCTATAAGGTGTCTGCCTTTGTCAAAGAAGTATACAATCCGAAATCTTAAGCTGAGGTTGGATTTGATTGCAAGGCTTCGCCACACACATTTGGTTTGCCTTTTGGGGCATGGTATTGATACTGGTGGTCGAGATGATTCCAGTGTATACAAAGTTTTTCTCATTTACGAGTATCTGCCTAATGGGAACTTTCGCAGCCATCTCTCTGAGAATGGTCCAGAAAAGGCTCTGAAATGGTCAGAGAGATTGTCTGTTCTAATTGGAGTTGCCAAGGCTTTGCACTTTCTGCACACTGGAGTTATTCCTGGTTTCTTCAACAATCGACTGAAGACGAATAATATCTTGCTGAATGAGCATGGGATGGCAAAGTTGAGTGACTATGGGCTCTCCATTATCTCAGAAGAGAATGACAAACATGGGGAAAAAGGGGATGGCCTGAAGTCATGGCAAATGACAAAATTAGAAGATGATGTGTATAGCTTCGGATTAATATTGCTTGAGTCATTGGTTGGACCGTCGGTTTCTGCAAGAAGGGAAGCGTTTCTACAAAATGAAATGGCATCTTTTGGGAGCCAGGACGGTCGGAGAAGAATAGTGGACCCAACTGTACTTGCCACTTGTTCACAAGAGTCTCTATCCATTGCCATTTCCATAACAAACAAATGCATTTCTCTTGATTCCTCGACCCGCCCATCTGCGGAGGATATCCTCTGGAACTTGCAGTATGCAGCTCAAATCCAAACCACAGCGGACGGCGATCAGAGGACGGACACGGCACCGTATCACTGA 2313 0.4323 MGYLSLLLLIFLSWNFFILGTHQLQSSQTQVLLQLRKQLEYPVQLEIWKDHTLDFCYLSSSTQVNITCQDSFVTGIKIMGDKTVKDSNFDGFAIPTVTLSGAFSMDSFVTTLARLTSLRVLSLVSLGIWGPLPDKIHRLSSLEYLDLSSNFLFGSVPPKICTMVKLQALSLDGNYFNGTVPDCLDSLSNLTVLSLGNNRLNGPFPASIQRIATLSDLDFSGNEISGKLPDLSRLTSLHLLDMSKNKLDSKLPALPKGVAMAFLSNNSFMGEIPQQYSRLVQLQHLDLSFNFLTGTPPEALFSLPNISYLNLASNTLSGSLSNHIHCSSELSFVDISNNKLTGGLPSCLSTALDKRVVNSDGNCLSIGFQHQHPDSYCMAVPVKKKESRSKDMGILVAVIGGVFVATLLLVFGCFFVCKRCCSRSISEQHLLHKTVQENSTTGLSSELLTNARFIPQVAKLGTEGVPVCRVFSLEELREATNNFDRSTFMGDGSNGKLYKGRLENGTQVAIRCLPLSKKYTIRNLKLRLDLIARLRHTHLVCLLGHGIDTGGRDDSSVYKVFLIYEYLPNGNFRSHLSENGPEKALKWSERLSVLIGVAKALHFLHTGVIPGFFNNRLKTNNILLNEHGMAKLSDYGLSIISEENDKHGEKGDGLKSWQMTKLEDDVYSFGLILLESLVGPSVSARREAFLQNEMASFGSQDGRRRIVDPTVLATCSQESLSIAISITNKCISLDSSTRPSAEDILWNLQYAAQIQTTADGDQRTDTAPYH* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0144 770 ProSiteProfiles Protein kinase domain profile. 483 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0144 770 Gene3D Ribonuclease Inhibitor 159 256 IPR032675 -
Vvi17g0144 770 Gene3D Ribonuclease Inhibitor 26 158 IPR032675 -
Vvi17g0144 770 Pfam Leucine rich repeat 281 340 IPR001611 GO:0005515
Vvi17g0144 770 Pfam Leucine rich repeat 165 224 IPR001611 GO:0005515
Vvi17g0144 770 Pfam Protein kinase domain 486 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0144 770 SUPERFAMILY L domain-like 64 364 - -
Vvi17g0144 770 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 567 767 - -
Vvi17g0144 770 Gene3D Phosphorylase Kinase; domain 1 458 566 - -
Vvi17g0144 770 Gene3D Ribonuclease Inhibitor 259 371 IPR032675 -
Vvi17g0144 770 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 25 255 - -
Vvi17g0144 770 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 94 749 - -
Vvi17g0144 770 SMART LRR_typ_2 187 221 IPR003591 -
Vvi17g0144 770 SMART LRR_typ_2 279 302 IPR003591 -
Vvi17g0144 770 SMART LRR_typ_2 139 163 IPR003591 -
Vvi17g0144 770 SMART LRR_typ_2 234 257 IPR003591 -
Vvi17g0144 770 FunFam Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 256 381 - -
Vvi17g0144 770 ProSiteProfiles Leucine-rich repeat profile. 213 235 IPR001611 GO:0005515
Vvi17g0144 770 Gene3D Transferase(Phosphotransferase) domain 1 567 767 - -
Vvi17g0144 770 Pfam Leucine Rich Repeat 141 158 IPR001611 GO:0005515
Vvi17g0144 770 SUPERFAMILY Protein kinase-like (PK-like) 465 748 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0144 Vvi-Chr17 1252543 1259365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0144 1 696 Miscellaneous Gene Families AT5G14210 57.041 0.0 772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vvi17g0144 Pkinase 3.5e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0144 - - vvi:100243936 1501.11