Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0138 ATGGAAGCTCTGGCTCTGCCCAATCCCAGTGAACTCTCTCCTCATCTCCTAGGGTTTCTGGACCATCGTTTTGGAACCCTTGAAGACCTTCTCACCGCCCCTAATCTCGCCGTTGAACTCTCCAAAATCTGTTCCGATTTGGACGCCGATCTCTCAGCCTTTCACCGGAACCTCAAAACCCTCATTGCCTCATGGACTCGCCGCTCGATTGCGGCGAAAACCGCCGTTCTCAGGCTCAACTATCGGTTGCAGAACCTCGGAGTTTTGGCGTCCCAGAACGACGTCGTTTTGAGCCAGGACCTCCCGCGTCTCGCCCGTGAACTGCTGCGAGTCGAGGCTGTTCGTGGGTACGCGGAGACTGCTCTGAGGTTGGAGGCGCTGATTGGGGATCTCGAGGACGTGATTTTCACGGAAAATGTTGCGGGTACTGTGAAGCAGGAGAGAGTGATCGGAGCTGTGAAGATCGTCGCTGATATCGATTCGGTATTGGCAAATGTCGCTGAATTTCAACCTCGGTGGCGAAGGCTTCTGAATTCAGTGGATGATAGAGTGGAGAAAGCTTTGAGCATTCTCCGGACGAGAGTTGTTGCGAGTCATAGAACTCTTCTTTCTTCATTGGGATGGCCGCCGAAGCTTTCGGTTTCGAAAATCGAAAATGGAGGAGTCTCGGCGATTCCGAATCCTCTGATGCTGATGAGAGGAGAGAAAAGGGAGAGTTATTCTCAGAGCTTTGTGGCTCTCTGTGCTTTGCAGCATGTGAGGGAAAAACGACGTCATAGTGATGATCTGGGGTTCAAAGCAAAGCTTTGGGCCATTGATGAACTGGTATCTCCTATTGCATCCAGAATTGAGTACCATTTCTCGAAGTGGGTTGATCAACCCGAGTTTATTTTCGCTCTTGTGCGTAAGATTACAAGCGATTTCGCTGTGGGTGTGGAAGAAGTCTTGCAGCCTCTGATTGATGAGGCTAGATTGGTGGGTTGTAGTGCCAAAGAAGCTTGGGTGTCCGCAATGGTGCAAATGCTTTCTGGGTTTTTGGGACACAGAGTATTCTCTGTTCTTGCTCAGAGGTACAAGGAGAAAGAGAAGAAATTGGAGGTTGGGTCTTCTTGGCTTCATTTGATTGACCTGATCGTTGCTTTCAATAAACAAATGCAATCACTTGTAAATTCAGAAAGTTATCTTCTAGCATCTGAGCTTGATAGGTTTGAAGGGTTCTCAGGGGGTTTATCTGTGTTGTCGATAGTCTGTGATAGGCTTGATTGGCTTAATATTTGGGCCAAGATTGAGCTCAGGGATGCTTGGAAGAAACTAAAAGCAGAATTGAAAGAGGACAGAGCTTGGTTAGTTGAAAGCAAGAAGGGAGTTGATGTTCTTACTAACAAAGAAACCGAGCGATTTCTTTTGTCTACTAGGGAAGACCATAGGGCTCCGGTAATTGCAGAATCCGCTCTTAAAATGGCCTGGGAAATGATTGATCGAGGCCAAACCCTACCTGCCATTTTACCACGAATCCAGTTTATCAGGTCCACTGCAGCCAGATTTTTGTGGTACTTTCTCAATGTACTGCTGTTGAGATGGAAGGGAACAGACTTATCTCCTGAGAATCCTGATGATGAGACACTAATGAGAGCCTGTGGATTGATCAATGCTGCAGGATATTGTGAGTTTAAACTGCAGCAATGGAGCGATGATGTGAACTTTTTGGAGATGAAAATGGCTGAGACAGAATCAAAGAACCCTGTTAAAGACAACACTAATGATCATAGTTGCTTCTTTGATGAAGAAATCAAGAGCTTGGATGAGCTCGAGACTAATTGGCTTATGGAGATAGTTGCTAATCTTCTTCGCCAGTTTGAGTTGCTTTCCTGGGAATACATGGAAAACCTGAAACATTTTGACCAAGAGCAAAACCGTTTTTGTCCAACTACAACTTCAGCAGCCATGGATTTGGCTATATCCCATGATCTTATCGAGGCATTGGATGCTTTGAGGAGTCAGCTTCTTGTTATAGAGAGGAGTCTCAATCCAAGAGACTTCTTGGATCTATGGAGGAGTGTTGCAGAGGGGCTCGACCATTTTATCTTTAGCAGTATCTTTGGAATTGATATTGGATTCTCCGAAGAAGGTGTTAATCAGATTGGAGCTGATATGAGGGCATTGTTCTCTGTTTTTCAGCCGTTTTGTGCCCGGCCTGAAGCATTTTTCCCTTGTATTAGAGATTCTCTTAGGCTACTAGAGATGGATAAGGGAGAGGTGAAGTATTTGCAGGCAGTTTTGTCCAGTGATGAAAATAGAATAAAATGCTTGAGATCTTGTGGAATTTCACACGTATCTTTTGGTCAAGGCTTTGTTTCTTCCCTTGAAACCTCTCTCCATACGGGAACTTCTAGGGTTTTTTTTTTTTTTCATACGCTTTCTTGCAGACCAAACAAAATTGTTGCAGAATACATGGCTGCTTTTAGTGCACTTTCTAGCTGTCCGTACACTCTCCCTTACCGGCCAAAACCTAGCAACCGTTCCATTTTGTGCCGTATGGGCTCTGCTCCCACTTCTGTAGGTACAAGTGTATCTAAAGTACCTCGCAAGAGATCACGAAGAATGGAAGGGGTTAAAAAAAGCATGGAAGACTCTGTTCAGCGCAAAATGGAGCAGTTCTATGAAGGGTCCGAAGGCCCACCACTCCGTGTTCTTCCAATAGGTGGTCTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGGAATTATGATCGATATATTTTGATTGATGCTGGTGTCATGTTTCCGGACTATGATGAGCTTGGTGTTCAGAAAATTATACCTGATACCACATTCATCAAGAAATGGAGCCACAAAATTGAAGCAGTGGTCATAACACATGGTCATGAAGATCACATTGGTGCGTTGCCTTGGGTTATCCCAGCTTTGGATTCCCATACGCCAATATTTGCATCATCTTTCACAATGGAGCTTATTAAAAAGCGTTTGAAGGAGTTTGGAATCTTTGTTCCATCTAGGCTTAAGGTGTTTAGAACAAGGAAGAAATTCATTGCTGGTCCATTTGAAATAGAGCCTATCAGGGTCACCCACTCTATTCCTGATTGTTGTGGATTGGTTATACGCTGTGCTGATGGTACAATTCTTCATACTGGGGACTGGAAGATTGATGAGTCCCCCTTAGATGGGAAAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCAAAAGAGGGAGTAACTTTGATGATGAGTGACTCAACCAATGTACTCTCCCCTGGAAGGACAATTAGTGAGAGTGTTGTAGCAGATGCACTATTGAGACATATTTCATCTGCTAAAGGAAGGGTTATAACTACTCAGTTTGCATCAAATATACATCGCCTTGGAAGTGTGAAAGCTGCAGCTGATTTAACAGGCAGAAAGTTGGTGTTTGTTGGTATGTCCTTGAGGACATATCTGGATGCAGCATGGAAGGATGGGAAGGCACCAATTGATCCATCGACATTGGTGAAAGTGGAAGATATTGATGCCTATGCTCCAAAGGATTTGCTTATTGTCACAACTGGCTCTCAAGCAGAACCACGTGCTGCTCTGAATCTTGCATCATATGGAAGTAGCCATTCCCTCAAATTGAGCAAGGAAGATATAATTTTATATTCAGCCAAGGTAATCCCGGGTAATGAAACTCGTGTAATGAAGATGCTAAACCGCGTATCAGAGATTGGATCAACTATCATAATGGGTAAGAATGAGGGGCTGCACACTTCTGGTCATGGATATCGTGGAGAATTGGAGGAAGTACTCAAGATTGTGAAGCCACAACACTTCTTACCCATTCATGGAGAACTCTTGTTCCTGAAAGAGCATGAATTGCTTGGAAAATCAACTGGCATTCGTCACACTACAGTTATAAAGAATGGGGAGATGCTTGGAGTTTCACACTTGAGGAACAGAAGAGTTCTGTCTAATGGTTTTATTTCCCTTGGGAAGGAGAATTTGCAGTTGATGTATAATGATGGGGATAAAGCATTTGGTACGTCAACTGAACTTTGCATTGATGAGAGACTAAGAATTGCATCAGATGGTATTATCGTAATCAGCATGGAAATATTACGCCCTCAAGTTGTAGATGGTGTAACTGAAAAAAGCTTAAAAGGGAAAATAAGAATCACCACACGATGCTTATGGCTTGACAAAGGGAAACTTCTAGATGCACTCCACAAAGCTGCCCATGCCGCACTTTCTAGCTGCCCAGTGAATTGTCCTTTAGCTCACATGGAAAGGACTGTGTCTGAGGTGTTGAGGAAGATGGTAAGGAAGTATAGCAGTAAGAGGCCTGAAGTTATTGCAATTGCTATTGAAAACCCATCAGCGGTTCTTGCTGGCGAGCTCAATGCAAGACTATCTGGAAAGTCGCATGTTGGTTTTGGCGCATCAGCACTAAGAGAAGTTGTTGATGAATATCCTAAAAAGAGACGGATGAACAGGATGCAAGAGGAGGCAGGTGGCCATATACAGGTAGAGAACACTTCACAACAAGATTTAAAAGGTGATGATGGTGTTGAAGTCCAACGATTACTATCTGAGGAAGAAACGAATTCTTCAAGTTCCAATAGTGCAGAAATATTTTCTCCTGATTCTGGGGACACTGAAGATTTCTGGAAATCATTCATTGACTCATCATCACCTGTTGACCAATTAATGGAAGACAAAATCAGTTTTGTTCCACAAGGCTATCCAATGGAGCTCAAGAAAGATTCTGAAATCAGAGAAGTTGACTCTTCTGAAGTGCCAAAATCTCAACCGAAGTCTCCCAAGCCCATGAAACGAAACAAATGGAAACCTGAAGAGGTTAAGAAACTTATTAGCATGCGTGGGGAATTGCATAGCAAATTCCAAGTTGTGAAAAGGCGAATGGCTCTCTGGGAAGAGATAGCTACAAACCTGTTGGCTGATGGAATCGATCGAACTCCAGGGCAGTGTAAATCCTTATGGACATCTCTGGTTCAGAAATATCAGGAAATCAAGGGTGATAAGAAAAGCAGGAAAAGTTGGCCACACTTTGAGGACATGAATGAAATTTTATCTGATTTAGAGCCAATGGCACCAAAATGA 5112 0.4372 MEALALPNPSELSPHLLGFLDHRFGTLEDLLTAPNLAVELSKICSDLDADLSAFHRNLKTLIASWTRRSIAAKTAVLRLNYRLQNLGVLASQNDVVLSQDLPRLARELLRVEAVRGYAETALRLEALIGDLEDVIFTENVAGTVKQERVIGAVKIVADIDSVLANVAEFQPRWRRLLNSVDDRVEKALSILRTRVVASHRTLLSSLGWPPKLSVSKIENGGVSAIPNPLMLMRGEKRESYSQSFVALCALQHVREKRRHSDDLGFKAKLWAIDELVSPIASRIEYHFSKWVDQPEFIFALVRKITSDFAVGVEEVLQPLIDEARLVGCSAKEAWVSAMVQMLSGFLGHRVFSVLAQRYKEKEKKLEVGSSWLHLIDLIVAFNKQMQSLVNSESYLLASELDRFEGFSGGLSVLSIVCDRLDWLNIWAKIELRDAWKKLKAELKEDRAWLVESKKGVDVLTNKETERFLLSTREDHRAPVIAESALKMAWEMIDRGQTLPAILPRIQFIRSTAARFLWYFLNVLLLRWKGTDLSPENPDDETLMRACGLINAAGYCEFKLQQWSDDVNFLEMKMAETESKNPVKDNTNDHSCFFDEEIKSLDELETNWLMEIVANLLRQFELLSWEYMENLKHFDQEQNRFCPTTTSAAMDLAISHDLIEALDALRSQLLVIERSLNPRDFLDLWRSVAEGLDHFIFSSIFGIDIGFSEEGVNQIGADMRALFSVFQPFCARPEAFFPCIRDSLRLLEMDKGEVKYLQAVLSSDENRIKCLRSCGISHVSFGQGFVSSLETSLHTGTSRVFFFFHTLSCRPNKIVAEYMAAFSALSSCPYTLPYRPKPSNRSILCRMGSAPTSVGTSVSKVPRKRSRRMEGVKKSMEDSVQRKMEQFYEGSEGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIKKWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIKKRLKEFGIFVPSRLKVFRTRKKFIAGPFEIEPIRVTHSIPDCCGLVIRCADGTILHTGDWKIDESPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRHISSAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSLKLSKEDIILYSAKVIPGNETRVMKMLNRVSEIGSTIIMGKNEGLHTSGHGYRGELEEVLKIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLMYNDGDKAFGTSTELCIDERLRIASDGIIVISMEILRPQVVDGVTEKSLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHMERTVSEVLRKMVRKYSSKRPEVIAIAIENPSAVLAGELNARLSGKSHVGFGASALREVVDEYPKKRRMNRMQEEAGGHIQVENTSQQDLKGDDGVEVQRLLSEEETNSSSSNSAEIFSPDSGDTEDFWKSFIDSSSPVDQLMEDKISFVPQGYPMELKKDSEIREVDSSEVPKSQPKSPKPMKRNKWKPEEVKKLISMRGELHSKFQVVKRRMALWEEIATNLLADGIDRTPGQCKSLWTSLVQKYQEIKGDKKSRKSWPHFEDMNEILSDLEPMAPK* 1704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0138 1703 Pfam RINT-1 / TIP-1 family 270 762 IPR007528 GO:0006888|GO:0006890|GO:0070939
Vvi17g0138 1703 CDD RNaseJ_MBL-fold 898 1309 - -
Vvi17g0138 1703 MobiDBLite consensus disorder prediction 1587 1611 - -
Vvi17g0138 1703 MobiDBLite consensus disorder prediction 1495 1547 - -
Vvi17g0138 1703 Gene3D - 899 1311 IPR036866 -
Vvi17g0138 1703 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 1252 1292 IPR011108 -
Vvi17g0138 1703 SMART Lactamase_B_5a 907 1104 IPR001279 -
Vvi17g0138 1703 Pfam Beta-lactamase superfamily domain 918 1054 IPR001279 -
Vvi17g0138 1703 MobiDBLite consensus disorder prediction 1526 1544 - -
Vvi17g0138 1703 MobiDBLite consensus disorder prediction 853 875 - -
Vvi17g0138 1703 Gene3D Dsl1p vesicle tethering complex, Tip20p subunit, domain D 592 727 IPR042044 -
Vvi17g0138 1703 CDD GT1 1610 1675 - -
Vvi17g0138 1703 Gene3D - 1612 1673 - -
Vvi17g0138 1703 SUPERFAMILY Metallo-hydrolase/oxidoreductase 895 1309 IPR036866 -
Vvi17g0138 1703 Pfam Myb/SANT-like DNA-binding domain 1609 1693 IPR044822 -
Vvi17g0138 1703 PANTHER RIBONUCLEASE J 810 1703 - -
Vvi17g0138 1703 ProSiteProfiles Myb-like domain profile. 1604 1668 IPR001005 -
Vvi17g0138 1703 Gene3D - 1096 1246 IPR042173 -
Vvi17g0138 1703 Coils Coil 559 579 - -
Vvi17g0138 1703 ProSiteProfiles RINT1/TIP20 domain profile. 187 756 IPR007528 GO:0006888|GO:0006890|GO:0070939
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0138 Vvi-Chr17 1201986 1215948 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0138 1611 1695 Trihelix Transcription Factor Family AT2G38250 35.632 2.94e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi17g0138 RINT1_TIP1 2.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0138 - - vvi:100268000 1704.49