LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi17g0136	ATGTATAATGCGATGGAGACTCCCTCCGGTGCCCATTTCTACGGTTTGCGTCCCGATGGCCTTCTCTCCTCCTCTGCTTCGTCTCCGCGCTCTCCTTCCTCTTCACTCTCTGTACCTTCCGGTGATCATAGCCTTCCGAAACAGCCCTTCGTTATAGGAGTAACGGGAGGTACGGCATCAGGGAAGACTACAGTGTGTGATATGATTATTCAACAACTACATGATCATAGAGTTGTGCTTGTCAATCAGGATTCTTTCTACCGCGGTTTAACAGCTAAAGAATTGGAAGATGTGCATAAATATAATTTTGATCATCCAGATGCATTTGATACGGAACAACTTCTGGATTGCATTCACAAGCTCAAGTCTGGACAGTCTGTTCATGTTCCAATATATGATTTTAAGACTCATCAACGTTGTTCTGATAGTTTTCGACAGGTAAATGCTTCTGATGTAATTATTTTGGAGGGCATACTGGTATTCCATGATCAGTGTGTTCGGGACTTGATGAATATGAAAATCTTTGTTGATGCAGATGCTGATGTAAGGCTTGCTCGCAGAATAAGTCGTGACACAGTTGAGAGGGGTAGAGATATACAGTCTGTTCTTGAACAGTATGCGAAATTCGTCAAGCCTGCTTTTGATAATTTTATTCTTCCATCAAAGAAGTTTGCTGATGTTATCATACCTCGGGGTGGTGAGAATCATGTTGCAATTGATTTGATTGTGCAACATATCCGCACAAAGCTTGGCCAGCATGATCTCTGCAAAATATATCCTAATGTGAATGTTATTCACTCTACATTCCAGATAAGGGGTATGCATACTCTGATTCGTGACAGAGAAATATCGAAACATGATTTTGTTTTTTATTCAGACCGGCTGATACGCCTGGTTGTGGAGCATGGCCTTGGCTACTTGCCATTCCTCGAGAAGCAAGTGTTCACTCCAACAGGATCAGTATATACTGGAGTTGAATTTTGCAAGAAACTGTGTGGAGTATCCATTATCCGAAGCGGTGAAAGCATGGAAAATGCATTGCGGGCATGTTGCAAAGGAATAAAAATAGGGAAAATCCTCATTCACCGTGACGGTGATAACGGGAAACAGCTTATATATGAGAAGCTTCCCAAAGATATTTCAGAACGGCATGTCCTCCTCCTGGACCCAGTTCTTGCTACTGGCAACTCCGCAAACCAGGCAATCGAACTTCTTATAAAGAAGGGGGTTCCGGAATCCTCCATAATATTCCTTAATCTTATCTCTGCTCCAGAGGGAATACAGTGCGTATGCAATAGGTTCCCATCTCTGAAAATTGTGACGTCGGAGATTGATGCTAAATTAAATGAGGAGTTTCGAGTCATACCAGGGTTGGGGGAGTTTGGTGACCGCTACTTTGGCACTGATGATTACTTTGTGCCAATTGAATAA	1431	0.4263	MYNAMETPSGAHFYGLRPDGLLSSSASSPRSPSSSLSVPSGDHSLPKQPFVIGVTGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTAKELEDVHKYNFDHPDAFDTEQLLDCIHKLKSGQSVHVPIYDFKTHQRCSDSFRQVNASDVIILEGILVFHDQCVRDLMNMKIFVDADADVRLARRISRDTVERGRDIQSVLEQYAKFVKPAFDNFILPSKKFADVIIPRGGENHVAIDLIVQHIRTKLGQHDLCKIYPNVNVIHSTFQIRGMHTLIRDREISKHDFVFYSDRLIRLVVEHGLGYLPFLEKQVFTPTGSVYTGVEFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIKKGVPESSIIFLNLISAPEGIQCVCNRFPSLKIVTSEIDAKLNEEFRVIPGLGEFGDRYFGTDDYFVPIE*	477

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi17g0136	476	NCBIfam	uridine kinase	49	249	IPR000764	-
	Vvi17g0136	476	FunFam	Uridine kinase	46	252	-	-
	Vvi17g0136	476	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	45	242	IPR027417	-
	Vvi17g0136	476	Gene3D	-	46	252	IPR027417	-
	Vvi17g0136	476	Pfam	Phosphoribulokinase / Uridine kinase family	51	237	IPR006083	GO:0005524\|GO:0016301
	Vvi17g0136	476	SUPERFAMILY	PRTase-like	252	469	IPR029057	-
	Vvi17g0136	476	Pfam	Uracil phosphoribosyltransferase	267	468	-	-
	Vvi17g0136	476	CDD	PRTases_typeI	329	428	IPR000836	-
	Vvi17g0136	476	PRINTS	Uridine kinase signature	49	66	-	-
	Vvi17g0136	476	PRINTS	Uridine kinase signature	217	230	-	-
	Vvi17g0136	476	PRINTS	Uridine kinase signature	181	191	-	-
	Vvi17g0136	476	PRINTS	Uridine kinase signature	124	139	-	-
	Vvi17g0136	476	PRINTS	Uridine kinase signature	195	206	-	-
	Vvi17g0136	476	PRINTS	Uridine kinase signature	79	90	-	-
	Vvi17g0136	476	PANTHER	URIDINE KINASE	42	379	-	-
	Vvi17g0136	476	Gene3D	-	253	468	IPR029057	-
	Vvi17g0136	476	CDD	UMPK	51	249	IPR000764	-
	Vvi17g0136	476	FunFam	Uridine kinase	253	468	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi17g0136	Vvi-Chr17	1190919	1197818	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi17g0136	4	470	PRT Gene Family	AT5G40870	83.510	0.0	786

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi17g0136	K00876		-	vvi:100257659	928.317