Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0130 ATGGCTGTGACATTCTATGGTGTCAACTCAGGCTCTGGCCTCAAGAAGCTTGATGAGTACCTCCTGACTAGGAGTTACATCAGTGGGTACCAAGCTTCAAAGGATGATATCACTGTTCATGCAGCTCTTTCAAAGGCTCCATCATCTGAATACGTGAATGTCTCTAGGTGGTACAACCACATAGAGTCACTTTTGAGGATTTCTGGTGTATCCGGGGAAGGTTGCGGTGTCACTATTGAGGGATTTGCTCCTGTTGATGCAGTTGCAACTCCTCCTGCTGAAGACACTAAGGCCACAGCTGCCGAGGATGATGATGATGATGATGTGGATCTGTTTGGTGAAGAAACTGAAGAAGAAAAGAAGGCTGCTGAAGCACGAGCGGCAGCTGTCAAGGCTTCTGGAAAGAAGAAAGAGTCTGGCAAGTCTTCAGTTTTGTTGGATGTGAAACCATGGGATGATGAGACTGACATGAAAAAGCTTGAGGAAGCAGTACGTAGCATTAAAATGGAAGGGTTGTTATGGGGAGCATCCAAACTTGTACCAGTTGGATATGGTATAAAGAAATTGCAGATTATGCTTACCATTGTGGACGACTTGGTTTCTGTGGACGACCTTATTGAGGAACAGTTGACTGTTGAACCCACGAATGAGTATGTCCAGAGCTGTGACATTGTAGCCTTCAACAAGATATAA 693 0.4502 MAVTFYGVNSGSGLKKLDEYLLTRSYISGYQASKDDITVHAALSKAPSSEYVNVSRWYNHIESLLRISGVSGEGCGVTIEGFAPVDAVATPPAEDTKATAAEDDDDDDVDLFGEETEEEKKAAEARAAAVKASGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSIKMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDDLIEEQLTVEPTNEYVQSCDIVAFNKI* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0130 230 FunFam Elongation factor 1-delta 1 3 78 - -
Vvi17g0130 230 Coils Coil 113 133 - -
Vvi17g0130 230 SMART EF1_GNE_2 141 230 IPR014038 GO:0003746|GO:0006414
Vvi17g0130 230 Pfam EF-1 guanine nucleotide exchange domain 143 230 IPR014038 GO:0003746|GO:0006414
Vvi17g0130 230 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 10 230 - -
Vvi17g0130 230 MobiDBLite consensus disorder prediction 90 109 - -
Vvi17g0130 230 SUPERFAMILY eEF-1beta-like 138 230 IPR036219 -
Vvi17g0130 230 Gene3D - 134 230 IPR014717 -
Vvi17g0130 230 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 105 113 IPR001326 GO:0003746|GO:0005853|GO:0006414
Vvi17g0130 230 MobiDBLite consensus disorder prediction 115 134 - -
Vvi17g0130 230 FunFam Elongation factor 1-beta 1 like 135 230 - -
Vvi17g0130 230 CDD EF1B 139 230 IPR014038 GO:0003746|GO:0006414
Vvi17g0130 230 Gene3D - 7 74 - -
Vvi17g0130 230 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 219 230 IPR001326 GO:0003746|GO:0005853|GO:0006414
Vvi17g0130 230 SUPERFAMILY GST C-terminal domain-like 11 68 IPR036282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0130 Vvi-Chr17 1091646 1093612 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0130 5 230 Eukaryotic Initiation Factors Gene Family AT2G18110 82.018 1.36e-118 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0130 K03232 - vvi:100252524 359.762