Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0107 ATGGAAGGCCACCAAATACTTTTTCCCGGTTCATCAAAATCACCCGCAAATCCTTTTCCACCAAACATGGCAAATTTTCATGCTATGAACATTTATAAGAGTGCTGGTTTTGATGCCTCTGAGACCAAGGAAAAACCAGGTAAAAAGGAAGGTCAAAAGAAGATTAGAAAGCACAGATTTGCGTTTCAAACGAGGAGCCATGTTGATATCCTTGATGATGGGTATCGATGGAGGAAATATGGGCAGAAAGCAGTCAAGAACAACAAATTTCCCAGAAGCTACTACCGGTGCACGTATAAAGACTGCAATGTGAAGAAGCAGGTCCAACGCCTCTCAAAAGATGAAGAGATTGTAGTCACAACCTATGAAGGCATTCATACACACCCTGTGGAGAAGCCCACCGAGAACTTTGAACACATCTTGAGGCAGATGCAATCATATTTTCCCATCTCATGA 456 0.4232 MEGHQILFPGSSKSPANPFPPNMANFHAMNIYKSAGFDASETKEKPGKKEGQKKIRKHRFAFQTRSHVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYKDCNVKKQVQRLSKDEEIVVTTYEGIHTHPVEKPTENFEHILRQMQSYFPIS* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0107 151 FunFam WRKY transcription factor 57 57 131 - -
Vvi17g0107 151 SUPERFAMILY WRKY DNA-binding domain 63 130 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi17g0107 151 MobiDBLite consensus disorder prediction 1 20 - -
Vvi17g0107 151 Pfam WRKY DNA -binding domain 72 129 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi17g0107 151 Gene3D WRKY domain 55 131 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi17g0107 151 SMART WRKY_cls 71 130 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi17g0107 151 ProSiteProfiles WRKY domain profile. 66 131 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi17g0107 151 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 43 133 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0107 Vvi-Chr17 922916 925015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0107 59 147 WRKY Transcription Factor Family AT5G13080 84.270 1.98e-55 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi17g0107 WRKY 1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0107 - - vvi:100232957 300.441