Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0104 ATGAAACACAATGGCACATGCTGTGTCTTAAGCATCCATCTTGGGAATGAATGGCTGGAAAGGGCATACCAGTTTTCTTCTGAAGCACTTACACCTTCTTGGGATTTGACTGAATTGGAGACAGAAGCCATTCCCAACATAGATGTGGTTGGTGGGACAAGCAGCTCTGGAGTACATAAGACTGGAGGGGATTTTTCCATTGATTTGAAGCTTGGTCAAGTCAGTAATCCCAGCAGTGACTTTGCTGATAAGTTGAAGGAGCAAAAATTTTCGAGTATTGCCGCTCCCTTGCCTTCAGGATCATCAAAGAGGGCAAGAGCCACTAACAATGGAAGCCAGACTGTTTCTTGCCTTGTTGATGGGTGCAATTCAGACCTTAGTAATTGCAGAGAGTACCATAGGAGGCATAAGGTCTGTGAGCTCCATTCTAAGACCGCCCAAGTCACAATTGGTGGCCACACACAGAGGTTCTGCCAGCAGTGCAGCAGGTTTCATTCGCTTGAGGAATTTGATGAGGGAAAGAGAAGCTGCAGGAAACGTCTTGATGGGCACAATAGACGGCGAAGAAAGCCTCAGCCGGAGCCCCTGTCACGTCCTGGAAGCTTTTTAACCAATTACCAAGGCTCGGGATTGTTACCATTCTCTAGTCCCCATCTGTATCCTACTACTGCTATGATGAGCCCCAACTGGGGAGCTGGACTTGTCAAAACCGAGGAAGGTGCTATACTTTATAACCAGCACCAACAGTTACCCTTGCTGGAAAAACAACATCTGCATCTTGGATCCTCCTCTAGCTTTTACAAAGGAGGGAAGCAACTGACTTTCTTGCAAGCTGACCACCCCTCTCTGAGCAACTACACAACTTCTGAAGCTCCTGTCTGCCAACCACTCGCCGGCCATGGCTGCAAAATGTTCTATGATAGGCTAACAAACCAAGTCCTCGAGTCAGATTGTGCTCTCTCTCTTCTGTCATCACCGCAGACCCAGTCATCAGGTATTAGTTTGAGCAACATGGTGCAGCCTAACTCAGTCTCCCTAGCACAGCCCTCAGCCCCAAGCCTGCATTACAACAATCAGCCTGTGGATTCTGTTCTGGTTTCCAATGCCGGTGTCACTGATATCCATTGCCCAGGAATATTTCACATTGGATCTGATGGATCCTCTGGGAACGAGGCACCTCAAAAGCTTCCCTTCTTCTGGGATTAG 1206 0.4801 MKHNGTCCVLSIHLGNEWLERAYQFSSEALTPSWDLTELETEAIPNIDVVGGTSSSGVHKTGGDFSIDLKLGQVSNPSSDFADKLKEQKFSSIAAPLPSGSSKRARATNNGSQTVSCLVDGCNSDLSNCREYHRRHKVCELHSKTAQVTIGGHTQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLSRPGSFLTNYQGSGLLPFSSPHLYPTTAMMSPNWGAGLVKTEEGAILYNQHQQLPLLEKQHLHLGSSSSFYKGGKQLTFLQADHPSLSNYTTSEAPVCQPLAGHGCKMFYDRLTNQVLESDCALSLLSSPQTQSSGISLSNMVQPNSVSLAQPSAPSLHYNNQPVDSVLVSNAGVTDIHCPGIFHIGSDGSSGNEAPQKLPFFWD* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0104 401 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 64 353 IPR044817 GO:0003677
Vvi17g0104 401 Pfam SBP domain 117 190 IPR004333 GO:0003677
Vvi17g0104 401 Gene3D - 107 178 IPR036893 GO:0003677|GO:0005634
Vvi17g0104 401 SUPERFAMILY SBT domain 115 196 IPR036893 GO:0003677|GO:0005634
Vvi17g0104 401 MobiDBLite consensus disorder prediction 181 202 - -
Vvi17g0104 401 ProSiteProfiles Zinc finger SBP-type profile. 114 191 IPR004333 GO:0003677
Vvi17g0104 401 FunFam Squamosa promoter-binding-like protein 14 108 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0104 Vvi-Chr17 904847 908446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0104 51 401 SBP-box Gene Family AT5G50670 44.536 7.76e-75 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vvi17g0104 SBP 4.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0104 - - vvi:100261045 761.14