Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0101 ATGGGGAGAGGGAAGGTGGAGCTGAAGAGAATAGAGAACTCCACAAGCAGGCAGGTGACATTCTCAAAGAGGAAGAACGGCCTTCTCAAGAAGGCCTTTGAGCTCTCCATCCTCTGCGATGCCGAAGTCGCCCTCCTCATCTTCTCCCCCTCCGGCAAGGCTTACCAGTTCGCCAGCCACGACATGGACAGGAGCATAGCCAGGTATAGGAATGAAGTTGGGTTGATGGAATTCAATAATTACCAACGCTCTAGAACAATTGAGCAGTTTTGGATGTCTGAAATCGATAACTTGAGGAGAACAATAGACACCTTGGAAGCAAAACATAAGCATTTGGCCGGAGAAGATTTGTCGACGCTGGGCATGAAAGAGCTAAAACAGCTGGAGAGGCAGCTGAAAAACGGGGTTGAACGAATTCGTGCTAAGAAGAGGCGAATCATTTCGGAGCATATCAGCCTGCTTAAAAAACGTCAAAGGGCCCTGCAAGAGGACAACACCCGCCTCCAAAAGAAACTGCACGAGGCCAACTTAAACACCAGAGCCTTTGGAGCAGAAGAATGTGATGCATTTGGGAGTGGCAGCAGTGGTTTTGGCGGTCCACATGACGGGGCCGGGATATGA 621 0.4992 MGRGKVELKRIENSTSRQVTFSKRKNGLLKKAFELSILCDAEVALLIFSPSGKAYQFASHDMDRSIARYRNEVGLMEFNNYQRSRTIEQFWMSEIDNLRRTIDTLEAKHKHLAGEDLSTLGMKELKQLERQLKNGVERIRAKKRRIISEHISLLKKRQRALQEDNTRLQKKLHEANLNTRAFGAEECDAFGSGSSGFGGPHDGAGI* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0101 206 Coils Coil 122 145 - -
Vvi17g0101 206 Coils Coil 88 115 - -
Vvi17g0101 206 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi17g0101 206 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi17g0101 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi17g0101 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi17g0101 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi17g0101 206 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Vvi17g0101 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi17g0101 206 Coils Coil 151 178 - -
Vvi17g0101 206 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977|GO:0045944
Vvi17g0101 206 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi17g0101 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Vvi17g0101 206 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi17g0101 206 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0101 Vvi-Chr17 878193 880629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0101 1 179 MADS-box Gene Family AT3G58780 44.385 1.52e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi17g0101 K-box 4.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0101 K09264 - vvi:100252657 389.423