Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0093 ATGGAGTGTAATAAAGATGAGGCAATCAGGGCTAAAGGAATTTCTGAGAGGAAGATGACAGAAAAGGACATGGCTGGAGCAAGAAAGTTTGCTATGAAAGCCCAAAACTTGTATCCTGGGCTGGATGGTCTTCCTCAGCTGCTTGCAACCATTGATGTCTATGTTGCTTCTGAGAGAAAAGTTAACGGGGAAGTTGACTGGTATGGAGTTCTTGGTGTGGATCCCTCAGCTGATGATGACACCATAAGGAAGCATTACAGGAAACTGGCTCTAGTTCTCCACCCTGACAAAAACAAGTTGGAAGTGGCAGATGGGGCATTTAAAATTCTGTCTGAAGCCTGGAGTTTGTTGTCTGATAAAGCCAAGAGAACTGCATATGATTTGAAGCGCAATCCAAGGGGTGCAAACCTGAAAGTCCCTAGTGGGAGTCGGCCAGCACCAGCAACTGGTAACAATGGTGGTCATAGTTTTACCAGTAGTAACAATACAGCCAGGAATCGATCAGCACCACAAACTGGTAACAATGGTGGTCGTGGTTTTACCAGCAGTAACAATACAACTAGGAATCAATCAGCATCTCGGACTAGTAACAATGGTGCTCATAATTTTACCAGTAACAATACAACCAGGAATCAATCAGCACCACCAACTGGTAACAATGGTGGTCATAATTTTACCAGAAGTAACAATACCAACAGGAATCGATCAGCACCAGTCAGTAATAGTGGTGCACACAATTTTACCAGCAGTGACAATACAATGATGAATCAATCAGCACCAGCTGGTAATAATGGTGTCCACAGGGCAAAGGATGATAAGCGTACCACTAATCCCAAGCCTGCACGGCCTCCTCCTAGTTCATCAAAACCTAATACATTTTGGACATTGTGTTCTCTCTGCAGAATGCAATATGAGTACCTTAGAACTTATCTGAACCATACACTTCTTTGCCCCAATTGCCATGAGCCTTTTCTTGCCTTTGAGACACCACCCCCACCTGCCTACACTCATGGCTCATACACTCCATGGACTGCCTACCAACAGAAACAGAGTTCAAATCAGCAGACAGGTCTACATACAACAAAGGAGAACACAGTTTCCTCTGGAAAGGATCCTGCTTCTACTCCAAATGCAGAACCAGCATGTTCTTCAGGTGTCGCCTCATTTAACCATGCAAATAATGCTGCAAATAATGCATCAGGATCATACTCTAAATCAGACAGTGTCAGGACTACAGCTTCAGCTTCTTCATGTGCTCAATCTACTCATGGGTTTCAGCCAACATATGAGAAATTGGAGAGAGAACATAAGGAGGCAAAAACAACAGCCATGAAAGAGCCGACTCTTCCGAGGAAAACTACTGTTTCTAAGAAAAGTGGTGGGTTAGCTACTGGAGCTTCTAATATTGGTTCCAGTTCTGTATTCAAAGGAGAGAGCCCTGTTAAAAGAAGGCGCATAAATGAATTTAGTCCAAATGACAGTAGAAGTCAGGGAACAAATCAAATGAGAATGGAAAATGGAGGAGCTGGGATCGGGAATCTACCTGGTTTTCAAAATTGTAATTCTGAAATGGGGAGGATCAATGCTTCTAGAAGTACTAGGCTTGATATTAGAAGAGAGCCATCACAGCTCGAAATCCGAAATATGCTTATGGAGAAGGCAAGGAGAGAACTTGTTAAGAAGCTGAGTGAATGGAGTTCAGCTGCTGAATCAAAGGCTTCGGTTCAAGAGGAGCAGGAGAAAGAGAAAGAGAAAGAGAAGCCAAAAGCTACGGTGAGTGGTAGAAAAAGTAATGCCAGCAAGTCTAGTGAGTCTGCAGATACCATTAACAGAATCCGGCCCAAGACATTGTCTGCTACCCTTCCTACTGATGCTGATGAAAACGAAACTGAACCCATGACGATGAGCGTTCCAGATCCTGATATTCATGATTTTGACAAAGACCGTACTGAACTTTCATTTGGTGAAAACCAAGTTTGGGCTGCTTATGATGATGATGATGGGATGCCTCGTTATTATGCTATGATTCATAGTGTGATATCATTGAAGCCATTCAAGTTGCGCATTAGTTGGCTAAATGCTAAAAGCAACACTGAACTGGCTCCACTCAACTGGGTTGTTTCTGGTTTTTCCAAGACCAGTGGGGAGTTTCGAATAGGTAAACAGATGGACAACGACTCTCTCAATTCTTTCTCCCACAAAGTAAAGTGGACAAAAGGGGTGAGGGGAAGAATCCAAATATATCCTAGAAAGGGAGACGTTTGGGCTCTTTATAGGAACTGGTCACCAGACTGGGATGAGCTTACCCCAGATGAAGTTATTCACAAGTATGAAATGGTGGAAGTAATCAAAGATTATAATGAGGATCAAGGAGTGGTCGTTGTGCCACTAGTTAAAGTTTCTGGTTTTAAGACGGTGTTTCACCAGCATTTGGACCCAAACAAAGTCAGGATGATTCCTCGAGAAGAGCTGTTTCGTTTCTCTCATCAGGTCCCATCGTACTTGCTCACTGGTCAAGAAGCTGAAAATGCTCCCAAGGGTTGCCTAGAGCTTGACCCAGCAGCTACACCTGTGGAACTCCTTCAGGTGATAACAGATTTTAAGGAAGAAGAGACGGCAGTGGCTTCTGAAAAAGGGAATGAAGAAGTGGAGGAAACATAA 2661 0.4344 MECNKDEAIRAKGISERKMTEKDMAGARKFAMKAQNLYPGLDGLPQLLATIDVYVASERKVNGEVDWYGVLGVDPSADDDTIRKHYRKLALVLHPDKNKLEVADGAFKILSEAWSLLSDKAKRTAYDLKRNPRGANLKVPSGSRPAPATGNNGGHSFTSSNNTARNRSAPQTGNNGGRGFTSSNNTTRNQSASRTSNNGAHNFTSNNTTRNQSAPPTGNNGGHNFTRSNNTNRNRSAPVSNSGAHNFTSSDNTMMNQSAPAGNNGVHRAKDDKRTTNPKPARPPPSSSKPNTFWTLCSLCRMQYEYLRTYLNHTLLCPNCHEPFLAFETPPPPAYTHGSYTPWTAYQQKQSSNQQTGLHTTKENTVSSGKDPASTPNAEPACSSGVASFNHANNAANNASGSYSKSDSVRTTASASSCAQSTHGFQPTYEKLEREHKEAKTTAMKEPTLPRKTTVSKKSGGLATGASNIGSSSVFKGESPVKRRRINEFSPNDSRSQGTNQMRMENGGAGIGNLPGFQNCNSEMGRINASRSTRLDIRREPSQLEIRNMLMEKARRELVKKLSEWSSAAESKASVQEEQEKEKEKEKPKATVSGRKSNASKSSESADTINRIRPKTLSATLPTDADENETEPMTMSVPDPDIHDFDKDRTELSFGENQVWAAYDDDDGMPRYYAMIHSVISLKPFKLRISWLNAKSNTELAPLNWVVSGFSKTSGEFRIGKQMDNDSLNSFSHKVKWTKGVRGRIQIYPRKGDVWALYRNWSPDWDELTPDEVIHKYEMVEVIKDYNEDQGVVVVPLVKVSGFKTVFHQHLDPNKVRMIPREELFRFSHQVPSYLLTGQEAENAPKGCLELDPAATPVELLQVITDFKEEETAVASEKGNEEVEET* 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0093 886 PRINTS DnaJ domain signature 102 122 IPR001623 -
Vvi17g0093 886 PRINTS DnaJ domain signature 68 86 IPR001623 -
Vvi17g0093 886 PRINTS DnaJ domain signature 86 101 IPR001623 -
Vvi17g0093 886 SMART dnaj_3 65 122 IPR001623 -
Vvi17g0093 886 Gene3D DnaJ domain 64 214 IPR036869 -
Vvi17g0093 886 MobiDBLite consensus disorder prediction 127 289 - -
Vvi17g0093 886 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Vvi17g0093 886 MobiDBLite consensus disorder prediction 428 445 - -
Vvi17g0093 886 MobiDBLite consensus disorder prediction 564 640 - -
Vvi17g0093 886 MobiDBLite consensus disorder prediction 574 592 - -
Vvi17g0093 886 MobiDBLite consensus disorder prediction 593 630 - -
Vvi17g0093 886 MobiDBLite consensus disorder prediction 447 475 - -
Vvi17g0093 886 MobiDBLite consensus disorder prediction 145 263 - -
Vvi17g0093 886 MobiDBLite consensus disorder prediction 414 517 - -
Vvi17g0093 886 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Vvi17g0093 886 PANTHER BNAC03G44070D PROTEIN 1 857 - -
Vvi17g0093 886 CDD DnaJ 66 119 IPR001623 -
Vvi17g0093 886 Pfam Domain of unknown function (DUF3444) 632 840 IPR024593 -
Vvi17g0093 886 MobiDBLite consensus disorder prediction 348 385 - -
Vvi17g0093 886 MobiDBLite consensus disorder prediction 491 506 - -
Vvi17g0093 886 Pfam DnaJ domain 66 127 IPR001623 -
Vvi17g0093 886 SUPERFAMILY Chaperone J-domain 59 131 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0093 Vvi-Chr17 819000 821660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0093 289 407 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 29.600 1.02e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0093 - - vvi:100854062 1699.49