Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0091 ATGGAGAACAACCAGCAGGCCCAATCCTCCCCATACCCACCACAGCAACCCTTTCACCATCTTCTGCAGCAGCAACAGCAGCAGCTTCAGATGTTTTGGTCCTACCAACGCCAAGAGATCGAGCAGGTGAACGACTTCAAGAACCACCAACTGCCTCTGGCCCGCATCAAGAAGATTATGAAGGCGGATGAGGATGTGCGGATGATCTCGGCGGAGGCCCCAATCCTCTTCGCCAAGGCCTGCGAGCTCTTCATTCTGGAGCTGACGATAAGGTCGTGGTTGCACGCGGAGGAGAACAAGAGGAGGACGCTGCAGAAGAATGATATCGCCGCGGCGATTACTAGGACGGATATATTTGATTTTTTGGTGGATATTGTGCCGAGGGATGAGATCAAGGACGAGGGGGGGTTGGGGATGGTAGGATCGACGGCCAGTGGGGTGCCGTACTATTATCCGCCGATGGGGCAGCCCGCGCCGGGGGTAATGATGGGAAGGCCGGCGGTTCCGGGGGTGGATCCGGGGGTGTACGTGCAGCCGCCGTCGCAGGCGTGGCAGTCGGTGTGGCAGACGGCAGAGGATGGGTCGTACGGGAGCGGAGGGAGCAGTGGACAGGGGAATCTTGATGGCCAAGGGTGA 636 0.5881 MENNQQAQSSPYPPQQPFHHLLQQQQQQLQMFWSYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEGGLGMVGSTASGVPYYYPPMGQPAPGVMMGRPAVPGVDPGVYVQPPSQAWQSVWQTAEDGSYGSGGSSGQGNLDGQG* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0091 211 FunFam Nuclear transcription factor Y subunit gamma 18 128 - -
Vvi17g0091 211 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 15 148 - -
Vvi17g0091 211 Pfam Core histone H2A/H2B/H3/H4 19 113 IPR007125 GO:0003677
Vvi17g0091 211 SUPERFAMILY Histone-fold 6 122 IPR009072 GO:0046982
Vvi17g0091 211 MobiDBLite consensus disorder prediction 187 211 - -
Vvi17g0091 211 Gene3D Histone, subunit A 15 128 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0091 Vvi-Chr17 803797 807185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0091 18 211 CCAAT-HAP5 Transcription Factor Family AT3G48590 85.854 1.11e-102 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vvi17g0091 CBFD_NFYB_HMF 2e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0091 - - vvi:100259532 342.813