Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0078 ATGGCTCCAAAGAAAGGTGGAAAAGTTTTGGCACAGACAAAGAAGAAACCTGAGAAGGTTGTAAATCCTCTATTTGAGAAGCGTCCAAAGCAGTTTGGAATCGGAGGAGCATTGCCTCCCAAGAGAGACTTGCACCGATTTGTGAAGTGGCCACATGTTGTTCGCATTCAGAGGAAGCGAAGGATCCTCAAGCAGCGGTTGAAGGTCCCACCAGCATTGAACCAGTTCACAAAGACTTTGGACAAAAACCTTGCAACAAGCCTTTTCAAGATGCTTCTCAAGTACCGTCCAGAAGACAAAGCAGCAAAGAAGGAACGCCTTCTGAAAAGGGCACAGTCAGAGGCTGAAGGAAAAACCATTGAGGTTAAGAAGCCCATTGTTGTGAAATATGGGCTCAACCATGTCACCTACCTTATTGAGCAGAACAAGGCACAATTAGTGGTTATTGCTCATGATGTGGACCCGATAGAGTTGGTTGTGTGGCTTCCTGCCTTGTGCAGGAAGATGGAGATCCCTTACTGCATTGTGAAGGGGAAATCGCGCTTGGGAGCGATTGTCCACAAGAAGACTGCAGCTGTTTTGTGTTTGACAACAGTTAAGAATGAGGATAAGTTGGAGTTCAGCAAAATCCTCGAGGCAATCAAGGCAAACTTCAATGACAAGTACGATGAGAACAGGAAGAAATGGGGAGGAGGGATCATGGGTTCCAAATCACAAGCCAAAACCAAGGCCAAGGAGAAGCTTCTTGCCAAGGAAGCTGCTCAGAGGATGTCCTAG 777 0.4659 MAPKKGGKVLAQTKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLHRFVKWPHVVRIQRKRRILKQRLKVPPALNQFTKTLDKNLATSLFKMLLKYRPEDKAAKKERLLKRAQSEAEGKTIEVKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGAIVHKKTAAVLCLTTVKNEDKLEFSKILEAIKANFNDKYDENRKKWGGGIMGSKSQAKTKAKEKLLAKEAAQRMS* 259
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0078 258 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 42 241 - -
Vvi17g0078 258 Coils Coil 101 121 - -
Vvi17g0078 258 PRINTS Ribosomal protein L7A/RS6 family signature 147 160 IPR018492 -
Vvi17g0078 258 PRINTS Ribosomal protein L7A/RS6 family signature 173 187 IPR018492 -
Vvi17g0078 258 PRINTS Ribosomal protein L7A/RS6 family signature 163 173 IPR018492 -
Vvi17g0078 258 PRINTS Ribosomal protein L7A/RS6 family signature 128 142 IPR018492 -
Vvi17g0078 258 PRINTS Ribosomal protein L7A family signature 29 46 IPR001921 -
Vvi17g0078 258 PRINTS Ribosomal protein L7A family signature 185 209 IPR001921 -
Vvi17g0078 258 PRINTS Ribosomal protein L7A family signature 124 144 IPR001921 -
Vvi17g0078 258 PRINTS Ribosomal protein L7A family signature 46 63 IPR001921 -
Vvi17g0078 258 PRINTS Ribosomal protein L7A family signature 66 85 IPR001921 -
Vvi17g0078 258 PRINTS Ribosomal protein L7A family signature 90 103 IPR001921 -
Vvi17g0078 258 PRINTS Ribosomal protein L7A family signature 217 237 IPR001921 -
Vvi17g0078 258 SUPERFAMILY L30e-like 85 219 IPR029064 -
Vvi17g0078 258 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 117 205 IPR004038 -
Vvi17g0078 258 Gene3D - 50 233 IPR029064 -
Vvi17g0078 258 FunFam 60S ribosomal protein L7a 50 233 - -
Vvi17g0078 258 ProSitePatterns Ribosomal protein L7Ae signature. 166 183 IPR004037 GO:0042254|GO:1990904
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi17g0078 Vvi-Chr17 711769 715770 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0078 1 258 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 86.822 4.70e-167 460
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0078 K02936 - vvi:100255902 479.559