LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi17g0078	ATGGCTCCAAAGAAAGGTGGAAAAGTTTTGGCACAGACAAAGAAGAAACCTGAGAAGGTTGTAAATCCTCTATTTGAGAAGCGTCCAAAGCAGTTTGGAATCGGAGGAGCATTGCCTCCCAAGAGAGACTTGCACCGATTTGTGAAGTGGCCACATGTTGTTCGCATTCAGAGGAAGCGAAGGATCCTCAAGCAGCGGTTGAAGGTCCCACCAGCATTGAACCAGTTCACAAAGACTTTGGACAAAAACCTTGCAACAAGCCTTTTCAAGATGCTTCTCAAGTACCGTCCAGAAGACAAAGCAGCAAAGAAGGAACGCCTTCTGAAAAGGGCACAGTCAGAGGCTGAAGGAAAAACCATTGAGGTTAAGAAGCCCATTGTTGTGAAATATGGGCTCAACCATGTCACCTACCTTATTGAGCAGAACAAGGCACAATTAGTGGTTATTGCTCATGATGTGGACCCGATAGAGTTGGTTGTGTGGCTTCCTGCCTTGTGCAGGAAGATGGAGATCCCTTACTGCATTGTGAAGGGGAAATCGCGCTTGGGAGCGATTGTCCACAAGAAGACTGCAGCTGTTTTGTGTTTGACAACAGTTAAGAATGAGGATAAGTTGGAGTTCAGCAAAATCCTCGAGGCAATCAAGGCAAACTTCAATGACAAGTACGATGAGAACAGGAAGAAATGGGGAGGAGGGATCATGGGTTCCAAATCACAAGCCAAAACCAAGGCCAAGGAGAAGCTTCTTGCCAAGGAAGCTGCTCAGAGGATGTCCTAG	777	0.4659	MAPKKGGKVLAQTKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLHRFVKWPHVVRIQRKRRILKQRLKVPPALNQFTKTLDKNLATSLFKMLLKYRPEDKAAKKERLLKRAQSEAEGKTIEVKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGAIVHKKTAAVLCLTTVKNEDKLEFSKILEAIKANFNDKYDENRKKWGGGIMGSKSQAKTKAKEKLLAKEAAQRMS*	259

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi17g0078	258	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	42	241	-	-
	Vvi17g0078	258	Coils	Coil	101	121	-	-
	Vvi17g0078	258	PRINTS	Ribosomal protein L7A/RS6 family signature	147	160	IPR018492	-
	Vvi17g0078	258	PRINTS	Ribosomal protein L7A/RS6 family signature	173	187	IPR018492	-
	Vvi17g0078	258	PRINTS	Ribosomal protein L7A/RS6 family signature	163	173	IPR018492	-
	Vvi17g0078	258	PRINTS	Ribosomal protein L7A/RS6 family signature	128	142	IPR018492	-
	Vvi17g0078	258	PRINTS	Ribosomal protein L7A family signature	29	46	IPR001921	-
	Vvi17g0078	258	PRINTS	Ribosomal protein L7A family signature	185	209	IPR001921	-
	Vvi17g0078	258	PRINTS	Ribosomal protein L7A family signature	124	144	IPR001921	-
	Vvi17g0078	258	PRINTS	Ribosomal protein L7A family signature	46	63	IPR001921	-
	Vvi17g0078	258	PRINTS	Ribosomal protein L7A family signature	66	85	IPR001921	-
	Vvi17g0078	258	PRINTS	Ribosomal protein L7A family signature	90	103	IPR001921	-
	Vvi17g0078	258	PRINTS	Ribosomal protein L7A family signature	217	237	IPR001921	-
	Vvi17g0078	258	SUPERFAMILY	L30e-like	85	219	IPR029064	-
	Vvi17g0078	258	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	117	205	IPR004038	-
	Vvi17g0078	258	Gene3D	-	50	233	IPR029064	-
	Vvi17g0078	258	FunFam	60S ribosomal protein L7a	50	233	-	-
	Vvi17g0078	258	ProSitePatterns	Ribosomal protein L7Ae signature.	166	183	IPR004037	GO:0042254\|GO:1990904

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi17g0078	Vvi-Chr17	711769	715770	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi17g0078	1	258	Cytoplasmic Ribosomal Protein Gene Family	AT3G62870	86.822	4.70e-167	460

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi17g0078	K02936		-	vvi:100255902	479.559