Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0076 ATGGCAAAGGCTAGCAGCAATGGTGTGTTTGAACTTAGTGTTAAGCAAGAGGAACCAACCTTGGTTCCTCCGGCAGAGGACACAGAGAAGGGTCTCTACTTCCTCTCCAACCTCGACCAGAACATTGCAGTGATTGTTCGAACTATTTACTGCTTTAAATCTGAGGCCAAAGGCAATGAGAGAGCTGCAGAAATCATCAAGGATGCCTTATCAAAGGTTCTTGTTCACTACTACCCCCTTGCTGGGAGGCTAACGATCAGCTCAGAGGGTAAACTGATTGTGGATTGTACCGGGGAAGGTGCTGTTTTTGTCGAGGCTGAAGCTAATTGTGCTGTAGAAGAGATCGGCGACATAACAAAACCCGACCCCGTGACTCTTGGGAAGCTTGTTTATGATATTCCTGGTGCTAGGAACATACTGGAGACACCTCCTCTTGTTGCTCAGGTGACTAAGTTCAAGTGTGGAGGATTTGTTCTTGGGCTATGTATGAATCACTGTATATTTGATGGGCTTGGTGCCATGGAATTTGTGAACTCATGGGGGGAAACTGCCAGAGGCTTGCCCCTGAAGGTGCCTCCATTCCTGGACAGGAGCATACTCAGAGCTAGAAACCCACCCAAGATAGAGTTCCCCCATCATGAATTCGCTGAAATTGAGGATGTATCAAACACCATGAAGCTTTATGAGGAGGAAATGCTCTACAGATCCTTCTGTTTCGACCCTGAAAAGCTTGATCAACTCAAGATGATAGCCATGGAAGACGGGGTTCTCCCCAAGTGCACTACATTTGAAGCCCTCTCCGCCTTTGTCTGGAGGGCTCGCAGCAAGGCCTTGGGCATGAAGCCCGAGCAACAGACGAAGCTCCTCTTTGCTGTCGACGGACGGTCCAGATTCCAGCCACCAATACCGACAGGCTACTGTGGGAATGGGATTGTGTTGACAAATTCTCTCTGCAGCGCAGGTGAGCTGCTGGAGAACCCACTTTCATTTGCAGTAGGGCTGGTTCAGGAGGCAGTTAAGATGGTGACAGACAGCTTCATGAGGTCAGCCATAGACTATTTCGAGATCACAAGAGCCAGGCCTTCTCTTGCTGCGACACTCCTCGTTACTACTTGGTCTAGGCTGTCTTTCCATACCACAGACTTCGGATGGGGGGAGCCCATTTTGTCAGGGCCGGTGGCCTTGCCGGAGAAGGAAGTGATTCTGTTCTTATCTCATGGAAAAGAAAGGAAAAGCATAAATGTGCTTCTGGGTTTGCCAGCTTCAGCTATGAAGGTGTTTGAAGAACTGATGCAGTTCTAG 1302 0.49 MAKASSNGVFELSVKQEEPTLVPPAEDTEKGLYFLSNLDQNIAVIVRTIYCFKSEAKGNERAAEIIKDALSKVLVHYYPLAGRLTISSEGKLIVDCTGEGAVFVEAEANCAVEEIGDITKPDPVTLGKLVYDIPGARNILETPPLVAQVTKFKCGGFVLGLCMNHCIFDGLGAMEFVNSWGETARGLPLKVPPFLDRSILRARNPPKIEFPHHEFAEIEDVSNTMKLYEEEMLYRSFCFDPEKLDQLKMIAMEDGVLPKCTTFEALSAFVWRARSKALGMKPEQQTKLLFAVDGRSRFQPPIPTGYCGNGIVLTNSLCSAGELLENPLSFAVGLVQEAVKMVTDSFMRSAIDYFEITRARPSLAATLLVTTWSRLSFHTTDFGWGEPILSGPVALPEKEVILFLSHGKERKSINVLLGLPASAMKVFEELMQF* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0076 433 Gene3D - 217 432 IPR023213 -
Vvi17g0076 433 Pfam Transferase family 13 431 - -
Vvi17g0076 433 Gene3D - 8 216 IPR023213 -
Vvi17g0076 433 FunFam Spermidine hydroxycinnamoyl transferase 12 215 - -
Vvi17g0076 433 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 20 430 - -
Vvi17g0076 433 FunFam Tryptamine hydroxycinnamoyl transferase 219 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0076 Vvi-Chr17 696682 698079 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0076 12 431 Monolignol Biosynthesis Gene Families AT5G48930 34.713 7.02e-89 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0076 K15400 - vvi:100854389 867.455