Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0073 ATGCCAAATATCAGCCCTTGTAGCTCAGTCTCAAACCCAGAAGCAGCTAAGCCTTCTAAGACCCCCAAAGGTTACTTCCCAGTCTATGTTGGAGCCCAGAAACAACGGTTCCTGATCAAGACCCAGTTCACTAACCACCCATTATTCATGACGCTGCTGGAAGAAGCTGAATTGGAATATGGGTACAGTAATGGAGGCCCTGTGTCGCTTCCATGCCATGTTGATACCTTCTACGAAGTGTTGGCGGAGATGGACGGTGGCCGAGATGAGATTAGTCGTCCTGGCAGTAGCTTTCTCAGTCCATCTCATAGTCTGGGTCTTGGCGACATGGCTAAGGGTTATGGTCATTATAGCCTTCTGATCAGTCCGTCTCGGATGCTTGAGGTGAATTGA 393 0.4911 MPNISPCSSVSNPEAAKPSKTPKGYFPVYVGAQKQRFLIKTQFTNHPLFMTLLEEAELEYGYSNGGPVSLPCHVDTFYEVLAEMDGGRDEISRPGSSFLSPSHSLGLGDMAKGYGHYSLLISPSRMLEVN* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0073 130 MobiDBLite consensus disorder prediction 1 20 - -
Vvi17g0073 130 Pfam Auxin responsive protein 15 82 IPR003676 GO:0009733
Vvi17g0073 130 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 18 79 IPR003676 GO:0009733
Vvi17g0073 130 MobiDBLite consensus disorder prediction 1 16 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0073 Vvi-Chr17 663556 663948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0073 18 81 Calmodulin-binding Proteins AT3G43120 50.000 1.25e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0073 K14488 - vvi:100247321 270.011