Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0060 ATGGAAAAGTTCAATTTTGTTAGAGACGGGGTGATTAGATTGCCACTTGGGTTTCGCTTCCAGCCAACAGACGAAGAGCTTGTTTTTCAGTACTTGAAATGCAAGGTCTTTTCGCGTCCGCTGCCTGCTTCAATCATTCCTGAGATTAATGTCAGCAAGTATGATCCTTGGGATTTGCCAGGTGATTTGGAGCAAGAGAAGTACTTTTTCAGTAACAAGGAAGCCAAGTATCAGATTGGAAACCGGAGCAATAGAGCAACAAGTTCTGGTTACTGGAAGGCGAGTGGCACAGACAAACAAATCACATCTTCAAGGAATAGTCAGCTGGTGGGGATGAAGAAGACACTGGTTTTCTATAGAGGGAAGCCTCCATATGATTCTAGGACTGATTGGGTCATGCATGAATATCGTCTTCTCATTGCAGGAGCTCCACAGACAAAGAACACACCCTCAAGCTCTTCGATCCAAATGGAAGACTGGGTTCTGTGTCGCGTATTTCTGAAGAGAAGAACAGGGGCTGAACATCATGAGGCCACAGAGTCATGTTCCAGTGGGATCACAGAAATTTCTTCAAGTGAATCAGACCATGAAGAAAGCAGTAGTACTGCTGGCTACAATTTCTTCCACTGA 630 0.446 MEKFNFVRDGVIRLPLGFRFQPTDEELVFQYLKCKVFSRPLPASIIPEINVSKYDPWDLPGDLEQEKYFFSNKEAKYQIGNRSNRATSSGYWKASGTDKQITSSRNSQLVGMKKTLVFYRGKPPYDSRTDWVMHEYRLLIAGAPQTKNTPSSSSIQMEDWVLCRVFLKRRTGAEHHEATESCSSGITEISSSESDHEESSSTAGYNFFH* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0060 209 ProSiteProfiles NAC domain profile. 14 168 IPR003441 GO:0003677|GO:0006355
Vvi17g0060 209 MobiDBLite consensus disorder prediction 178 209 - -
Vvi17g0060 209 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 185 - -
Vvi17g0060 209 Gene3D NAC domain 23 172 IPR036093 GO:0003677|GO:0006355
Vvi17g0060 209 SUPERFAMILY NAC domain 10 168 IPR036093 GO:0003677|GO:0006355
Vvi17g0060 209 MobiDBLite consensus disorder prediction 177 209 - -
Vvi17g0060 209 Pfam No apical meristem (NAM) protein 15 138 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0060 Vvi-Chr17 507624 508606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0060 1 175 NAC Transcription Factor Family AT5G13180 61.714 1.38e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi17g0060 NAM 3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0060 - - vvi:100252516 418.698