LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi17g0049	ATGGGTTGCGTTCAGAGCAAGAGAGCTTCCAGAGATGACCCGAGCGCGGCCGGGGAGTCGGACAGGCAGCGGGAGCTGGAGGAGCTGTCAAACGCTCTTAAGAATGTTGTTAAGGGTAGGAAGGAGGGAATGGAGGTCGCAAGGGGGGTGGAGAGGGAGAAGGTTACACGTGCCGGAGATTCCCCGGCGACGGAGCGGCGGCGACCGCGTCCGGAGCCGTACTTGAGGAGCCAACGAGGGTGGCCGTCGTGGTTGTTGGACGCCCTTGGTGACGGAATCCAGGATTGGACTCCTCGCTGCGCCAACTCCTTCGAGAAGCTCGATAAGATCGGCCAAGGAACGTACAGCAATGTTTATAAAGCAAGGGATCTAATTACAGGAAAGATAGTAGCTTTGAAAAAGGTTAGGTTTGATAATTTGGGGCCAGAGAGCGTGAAATTCATGGGAAGAGAGATTCTTGTTCTTCGAAAACTCAATCATCCCAATGTGATTAAGCTTGAAGGTTTGGTTACATCAAGAATGTCTTGTAGCCTCTACTTGGTTTTTGAGTACATGGAGCACGATCTCGCAGGCCTCGTTGGCCATGGCTCCTATCTCTCCACCAGCCAAGGCCGCAAATTCACTGAGCCACAGGTCAAATGCTTTATGAAGCAATTACTCTCTGGGCTTGAGCATTGTCACAACCAAGGTGTTCTGCATCGAGATATCAAGGGTTCCAATCTGTTAATCAACAATGAAGGAATTCTAAAAATAGCTGATTTTGGACTGGCTACTTTTTTTGATCCTGACCGCAGGCGGCCCATGACTAGTAGAGTTGTCACTCTTTGGTACCGACCCCCAGAACTACTTCTTGGGGCCACTTATTATGGTGTTGGTGTTGACCTTTGGAGTGCTGGCTGCATTTTGGCGGAGTTGCTTGGTGGGAAGCCAATAATGCCTGGACGAACAGAGGTTGAACAAGTGCATAAGATATTCAAGTTATGTGGCTCCCCATCTGAAGAATATTGGAAGAAATCCAAACTGCCACATGCAACAATCTTTAAGCCGCAACAGCCGTACAAACGCTGTGTAGCAGAAGCATTCAAGGATTTCCCTTGTTCTTCGCTTCCTTTGATTGAAGCTCTTCTTTCAATTGATCCTGATGACCGAGGCACTGCCACTTCTGCTTTAAATAGTGAATTCTTTACTACTGAACCATATGCTTGTGAGCCGTCAAGTTTGCCAAAGTGTCCTCCCACCAAAGAAATTGATGTAATAAAATTAAGAGATGAAGCAAGAAGGCAAAGAGGGGTGAGCGGGAAAGCCAATGTTGTTGATGGTAACAGAAGAGTCAGAGCTCGTGATCGGGGTGGACGGGCAGTTCCAGCTCCAGAAGCCAATGCAGAGCTCCAAGCAAACTTGGATAAGTGGAGAGTGATGAATCCAGCAAATTCCGAGAGCAAGAGCGAGAAATTCCCGCCTCCCCATCAGGATGGAGCAGTTGGATTCCCTCACACATCACGCAATGGACCTGTATCATTTGGTGCAACTGATACTTCATTTAGCTCATCATTTTTCAATCTAAAGCACTCGACATCTGTTCGACATACTGGGACTGCAGGAGGCCCTTCAAAGAGAAAAAGCAGCAGAGCAGAGCCCCAAACAGCTCCATCTCGTAGGTTCCTCCGATTACTCAAGACATCCTCAACAACTCCATCAATGCATCCAAGCTCAAAGGGCAAAGAATCAGTTTCAGAAGTTTTTGGCAGCCAAAAAGTAAAGTAA	1764	0.4813	MGCVQSKRASRDDPSAAGESDRQRELEELSNALKNVVKGRKEGMEVARGVEREKVTRAGDSPATERRRPRPEPYLRSQRGWPSWLLDALGDGIQDWTPRCANSFEKLDKIGQGTYSNVYKARDLITGKIVALKKVRFDNLGPESVKFMGREILVLRKLNHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLVGHGSYLSTSQGRKFTEPQVKCFMKQLLSGLEHCHNQGVLHRDIKGSNLLINNEGILKIADFGLATFFDPDRRRPMTSRVVTLWYRPPELLLGATYYGVGVDLWSAGCILAELLGGKPIMPGRTEVEQVHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYKRCVAEAFKDFPCSSLPLIEALLSIDPDDRGTATSALNSEFFTTEPYACEPSSLPKCPPTKEIDVIKLRDEARRQRGVSGKANVVDGNRRVRARDRGGRAVPAPEANAELQANLDKWRVMNPANSESKSEKFPPPHQDGAVGFPHTSRNGPVSFGATDTSFSSSFFNLKHSTSVRHTGTAGGPSKRKSSRAEPQTAPSRRFLRLLKTSSTTPSMHPSSKGKESVSEVFGSQKVK*	588

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi17g0049	587	Gene3D	Transferase(Phosphotransferase) domain 1	197	434	-	-
	Vvi17g0049	587	FunFam	probable serine/threonine-protein kinase At1g54610	91	186	-	-
	Vvi17g0049	587	PANTHER	CELL DIVISION PROTEIN KINASE	102	399	-	-
	Vvi17g0049	587	MobiDBLite	consensus disorder prediction	40	74	-	-
	Vvi17g0049	587	SUPERFAMILY	Protein kinase-like (PK-like)	97	400	IPR011009	-
	Vvi17g0049	587	ProSiteProfiles	Protein kinase domain profile.	104	395	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi17g0049	587	SMART	serkin_6	104	395	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi17g0049	587	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	231	243	IPR008271	GO:0004672\|GO:0006468
	Vvi17g0049	587	FunFam	probable serine/threonine-protein kinase At1g54610	187	435	-	-
	Vvi17g0049	587	ProSitePatterns	Protein kinases ATP-binding region signature.	110	133	IPR017441	GO:0005524
	Vvi17g0049	587	Gene3D	Phosphorylase Kinase; domain 1	91	186	-	-
	Vvi17g0049	587	MobiDBLite	consensus disorder prediction	40	75	-	-
	Vvi17g0049	587	MobiDBLite	consensus disorder prediction	427	460	-	-
	Vvi17g0049	587	MobiDBLite	consensus disorder prediction	476	508	-	-
	Vvi17g0049	587	CDD	STKc_CDK9_like	104	395	-	-
	Vvi17g0049	587	MobiDBLite	consensus disorder prediction	525	587	-	-
	Vvi17g0049	587	Pfam	Protein kinase domain	104	395	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi17g0049	587	MobiDBLite	consensus disorder prediction	1	25	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi17g0049	Vvi-Chr17	407132	413202	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi17g0049	96	461	Core Cell Cycle Gene Families	AT5G10270	46.875	1.23e-111	341

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Vvi17g0049		Pkinase	4.2e-65	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi17g0049	K08819		-	vvi:100264561	1149.81