Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0045 ATGTTGAATGCTCCATCGCCAGCCAACAATATCCCAGTCTCCTTCTCTCCACCATCGCCACTACCATCATCTCCATCTCTCTTCTTTGTGTACTCTGCCGCTATGAAAATACCTGAAACTGAGCATATCAACCAGCTTATCTCTTCTCTGTCTGATGAGATACCTCATATACAGACCTTCAAAGGGAAATGGGCAGTTATCAGAGGCAAGCTGGGTGATCTCAGGACCCAAGTGGCTGATTTTGGTGACTTTCCTGGGTTCAAGTCCAATCCTCTTTCTATGGAACTCATGCAGTCCATTTCGCAGACCCTACAAGACGCCGTTTTGGTGGCTTCGAGGTGTAGAGAGTCTGAGTTGTCTCAGGGGAAGCTCAAGACCCAGAGCGATATAGACTCGATTTCCGCGAAGCTGGACCGTTTGATCAAAGATGGTGAGATCTTGATAGGGAGTGGAGTGCTTCAAGATGGGGTATTGGTGGGTTCGAAGAGGGAAGTGGTGCGAGCGGAGGCGAGGAACTTGATAACTCGGTTGCAGATTGGGAGTTCCGAGTCCAAGAACTCGGCGATGGACTCGTTGTTGGGTTTGCTCTCTGAGGATGACAAGAACGTGATGATCTCGGTGGCACAAGGCGTGGTTCCGGTGCTCGTACGCCTACTCGATTCCAGCTCTTCTGTGGAGATGAAGGAGAAGACCGTGGCGGCGATTTCCAGGGTCTCGATGGTGGATAGTGGCAGAAATGTGTTGGCTGCTGAAGGGTTGTTGCTTTTGAATCATTTGCTTCGAGTTCTGGAATCGGGAAGTGGGTTCGCAAGAGAAAAGGCTTGTGTTGCCCTCCAATCTCTGAGCTTTTCGAAAGAGAACGCTAGGGCAATTGGGTGTAGAGGTGGAATTTCATCTCTATTAGAGATTTGTGATGCTGGGACGCCGAGTTCTCAGGCTGTTGCGGCTGGGGTTTTGAGGAATCTTGCTGGGTTTCAAGAAATAAAGGAGAATTTCATCGAGGAGAATGCGATTTCTGTTATTCTTAGGCTTCTGGCTTCGGGAACAGCCTTTGCGCAAGAAAATGCAATTGGGTGTCTGTGTAATTTAGTATCTGAAGATGAGAATTTGAAGCTTTTGGTTGCTAGGGAGGGAGGGATCCAGTGTTTGAAGAATTTCTGGGATTCAGTTGGGGCAGTTGGAAGTCTTGAAATTGCTGCCGAGTTCTTGAGACACTTGGCTTTGTGCCCGTCAATTGCAGAAGTGCTTGTTTCTGATGGATTTATTGGTCGGCTCATGGTGCTGTTGAATTGTGGGGTGGTAGGTGTGAGAATTGCCGCAGCTAAGGCTGTTGATGCATTGGGCTTTAGCACAAAATCGAGGAAAGAGATGGGTGAATGTGGGTGTATTCCTCCATTGGTTGGAATGTTGGATGGTAAGTCTATTGAAGAGAAAGCAGCAGCGGCGAAGGCATTGTCCAATCTCATGCTCTATGTGGGCAATAGAAAGATTTTTCGGAAGGATGAAAGGGGAATAGTAGGGGCAGTTCAGCTTCTGGATCCTTTGATACATAATTTGGAGAAGAAGTACCCTGTTTCTGTATTGACCTTAGTTGTGAATTCAAAGACCTGCAGAAAGCAAATGGTTGCTGCCGGTGCTTGTGTATACTTGCAGAAACTCGTCGAGATGGATATTGAAGGGGCTAAGAAGCTTTGGGAAAGCCTTGGTCCGAAAGCCAATAAATTAATAATGCTTTATTCTCTATGA 1746 0.4725 MLNAPSPANNIPVSFSPPSPLPSSPSLFFVYSAAMKIPETEHINQLISSLSDEIPHIQTFKGKWAVIRGKLGDLRTQVADFGDFPGFKSNPLSMELMQSISQTLQDAVLVASRCRESELSQGKLKTQSDIDSISAKLDRLIKDGEILIGSGVLQDGVLVGSKREVVRAEARNLITRLQIGSSESKNSAMDSLLGLLSEDDKNVMISVAQGVVPVLVRLLDSSSSVEMKEKTVAAISRVSMVDSGRNVLAAEGLLLLNHLLRVLESGSGFAREKACVALQSLSFSKENARAIGCRGGISSLLEICDAGTPSSQAVAAGVLRNLAGFQEIKENFIEENAISVILRLLASGTAFAQENAIGCLCNLVSEDENLKLLVAREGGIQCLKNFWDSVGAVGSLEIAAEFLRHLALCPSIAEVLVSDGFIGRLMVLLNCGVVGVRIAAAKAVDALGFSTKSRKEMGECGCIPPLVGMLDGKSIEEKAAAAKALSNLMLYVGNRKIFRKDERGIVGAVQLLDPLIHNLEKKYPVSVLTLVVNSKTCRKQMVAAGACVYLQKLVEMDIEGAKKLWESLGPKANKLIMLYSL* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0045 581 SUPERFAMILY ARM repeat 172 553 IPR016024 -
Vvi17g0045 581 Gene3D - 391 561 IPR011989 -
Vvi17g0045 581 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 40 575 - -
Vvi17g0045 581 MobiDBLite consensus disorder prediction 1 20 - -
Vvi17g0045 581 SMART arm_5 284 324 IPR000225 GO:0005515
Vvi17g0045 581 SMART arm_5 450 490 IPR000225 GO:0005515
Vvi17g0045 581 SMART arm_5 325 365 IPR000225 GO:0005515
Vvi17g0045 581 SMART arm_5 199 240 IPR000225 GO:0005515
Vvi17g0045 581 Gene3D - 161 389 IPR011989 -
Vvi17g0045 581 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 210 253 IPR000225 GO:0005515
Vvi17g0045 581 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 336 378 IPR000225 GO:0005515
Vvi17g0045 581 Pfam Armadillo/beta-catenin-like repeat 200 236 IPR000225 GO:0005515
Vvi17g0045 581 Pfam Armadillo/beta-catenin-like repeat 453 488 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0045 Vvi-Chr17 359709 361734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0045 171 458 U-box Gene Family AT1G71020 26.027 4.44e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0045 - - vvi:100256102 1040.02