Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0040 ATGGCGACTAGGTACTGGGTCGTCTCCCTCCCCGTTCCGACCTCTGCATCGTCTCTATGGAGTCGCCTTCAGGAATCCATCTCCAAACACTCCTTCGACACTCCTCTCTACAGGTTCAATACTCCGGATCTTCGCGTTGGAACTCTCGATTCTCTTCTGTCTCTCAGTGACGATCTTCTGAAGTCGAATAGCTTTGTCGAGGGAGTGACTCACAAGATACGGCGTCAGATCGAGGAGTTGGAGAGGGGTTCGGGCGGTGAGAGTAATGCTTTGACAGTGGATGGGGTTCCTGTTGATTCCTACTTGACGAGGTTCGTGTGGGATGAGGCGAAGTACCCTACAATGTCTCCTCTCAGGGAGATTGTGGATGGCATTCATGTACAAGTAGCTAAGATTGAGGATGATCTTAAGGTTCGTGTTGCTGAGTATAACAATGTACGCAGTCAGCTTAATGCCATAAACAGAAAGCAAACTGGAAGCTTAGCTGTACGTGATCTGTCCAACTTAGTGAAGCCGGAGGATATTATTACTTCAGAACACTTGGTGACGCTCCTTGCTGTTGTTCCTAAGTATTCACAGAAGGATTGGTTATCAACCTATGAAACACTTGCCACCTATGTGGTCCCCAGGTCATCCAAGAAGTTGCACGAGGACAATGAATATGCTCTCTATACTGTAACTATATTTGGTCGTGTTGCTGACAATTTTAAGACTAGCGCACGAGAGAGAGGTTTTCAAATTCGTGATTTTGAATATAGTCCAGAAACACAAGAGAGTAGGAAGCAGGAGTTGGAAAAACTGATGCTAGATCAGGACACGATTAGAACCTCTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGGTCTTCAGCTCCTGGATGCACTTTTGTGCTGTACGTGTCTTTGCAGAGAGCATTCTGAGATATGGATTGCCACCATCTTTCTTATCAGTGGTATTGGCACCTTCTGTTAAAAGCGAAAAGAAAGCACGCTCAATCCTAGAAGGTCTGTCTGACAGTGCTAACAGCACATATTGGAAATCCGAAGATGAACTTGGAGGTATGGGCAGCCTAGGAGGTGATGCTGATTCTCATCCTTACGTCTCCTTCACCATAAATCTGGTCTGA 1128 0.461 MATRYWVVSLPVPTSASSLWSRLQESISKHSFDTPLYRFNTPDLRVGTLDSLLSLSDDLLKSNSFVEGVTHKIRRQIEELERGSGGESNALTVDGVPVDSYLTRFVWDEAKYPTMSPLREIVDGIHVQVAKIEDDLKVRVAEYNNVRSQLNAINRKQTGSLAVRDLSNLVKPEDIITSEHLVTLLAVVPKYSQKDWLSTYETLATYVVPRSSKKLHEDNEYALYTVTIFGRVADNFKTSARERGFQIRDFEYSPETQESRKQELEKLMLDQDTIRTSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLSVVLAPSVKSEKKARSILEGLSDSANSTYWKSEDELGGMGSLGGDADSHPYVSFTINLV* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0040 375 CDD V-ATPase_C 5 372 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vvi17g0040 375 Gene3D - 163 251 - -
Vvi17g0040 375 SUPERFAMILY Vacuolar ATP synthase subunit C 1 374 IPR036132 GO:0015078|GO:0033180|GO:1902600
Vvi17g0040 375 Pfam V-ATPase subunit C 5 368 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vvi17g0040 375 FunFam V-type proton ATPase subunit C 163 251 - -
Vvi17g0040 375 Gene3D Vacuolar atp synthase subunit c; domain 1 7 334 - -
Vvi17g0040 375 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 2 374 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vvi17g0040 375 Gene3D - 41 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0040 Vvi-Chr17 309626 318786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0040 1 374 Primary Pumps ATPases(2) AT1G12840 81.283 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0040 K02148 - vvi:100266332 733.021