Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0039 ATGGCAGCCTTTTCGTATCAACACCCACCTTTTCTTCTTGACTCAGTTTTCTTGCCGAGTACTCCCATTAAGATGTCTGGTTTTATGGAGGAAGGGAACACCACCACTTGTTTCTCTCAGTTTTTCCCTTCTGAATCTCTTCATGAGGTTCCTGCTGATGCTAGGGTTCATGAAAGTACGTCTCTTCAACACAGCTCAAAGGTCACTCTCAGTGACAATGAGCCTTGTGTGACCCAGAAACTGAGCACAGACTCTTCGTCAGTGGTGGATAGGCTTGAACTTGGTGAACAGGTCACCCAGAAGGTGGCTCCCATAGAGAGGGAGAGGAAGAGGAAGAGCAGAGATGGGTCTTCCTTGACTTCTGCTCAATCGAAGGATGCAAGAGAAGGGAAAGGAAAGAAGGCAAAGAAAGGCAGTGGTCTGGTGAAGGATGGAGAAGAGGAGCAGCTCAAAGCAGACAAGAAGGATCAGAAGAAAGCCTCTGAAGAGCCTCCAACCGGCTACATTCATGTAAGAGCAAGGAGGGGCCAAGCAACAGACAGCCACAGCCTTGCAGAGAGGGTAAGAAGAGAGAAAATCAGTGAGAGGATGAAGCTCTTGCAAGCACTTGTTCCTGGTTGTGACAAGGTTACTGGAAAGGCCCTTATGTTGGATGAAATAATCAACTATGTCCAGTCCCTACAGAATCAAGTAGAGTTCCTCTCTATGAAGCTTGCTTCTGTGAATCCTATGTTCTATGACTTTGGCATGGACCTAGATGCACTCATGGTGAGGCCAGAGAGATTGAGTGCCTTGACATCACCACTGCCATCTCTGCAACAATGCAGTCCTTCCCAGCCCACAGCTTATGCTGATACAACCACCACCTTCACTGCAACAAATAACTATCCTGTTATGGACACTTCAGCTTCAATTTTATTTCACCAGGGGCAAAGGCTAAATGTCTTCTCACAGGATAATGGTAGTCTATTGTGGGATGTGGATGATCAAAGACAGAAGTTCATTAATCCATCTGGACTCATCAGCAACAACTTGTGTTCTTTCAATTAA 1050 0.4619 MAAFSYQHPPFLLDSVFLPSTPIKMSGFMEEGNTTTCFSQFFPSESLHEVPADARVHESTSLQHSSKVTLSDNEPCVTQKLSTDSSSVVDRLELGEQVTQKVAPIERERKRKSRDGSSLTSAQSKDAREGKGKKAKKGSGLVKDGEEEQLKADKKDQKKASEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKLLQALVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYDFGMDLDALMVRPERLSALTSPLPSLQQCSPSQPTAYADTTTTFTATNNYPVMDTSASILFHQGQRLNVFSQDNGSLLWDVDDQRQKFINPSGLISNNLCSFN* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0039 349 MobiDBLite consensus disorder prediction 53 74 - -
Vvi17g0039 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 244 IPR036638 GO:0046983
Vvi17g0039 349 CDD bHLH_AtBPE_like 167 251 - -
Vvi17g0039 349 MobiDBLite consensus disorder prediction 58 74 - -
Vvi17g0039 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 227 IPR011598 GO:0046983
Vvi17g0039 349 SMART finulus 183 233 IPR011598 GO:0046983
Vvi17g0039 349 MobiDBLite consensus disorder prediction 102 116 - -
Vvi17g0039 349 Gene3D - 174 246 IPR036638 GO:0046983
Vvi17g0039 349 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 75 279 IPR024097 GO:0006355
Vvi17g0039 349 MobiDBLite consensus disorder prediction 100 166 - -
Vvi17g0039 349 Coils Coil 143 163 - -
Vvi17g0039 349 Pfam Helix-loop-helix DNA-binding domain 181 228 IPR011598 GO:0046983
Vvi17g0039 349 MobiDBLite consensus disorder prediction 126 166 - -
Vvi17g0039 349 FunFam Basic helix-loop-helix transcription factor 174 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0039 Vvi-Chr17 299665 301586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0039 1 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 44.483 3.70e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi17g0039 HLH 5.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0039 - - vvi:100268131 637.491