Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0033 ATGGTTAAGGACCAAAAGGAGGAGCCTGCAATTATCACCAACACCACACCCCACCAGGAAGAGAAGGACCCCGAGTTCGGATCTGAGGACTTGCTTGAGTCCCCATTGCCCCTCACCGTCACTTCTCGGGTGTTGTATATGTTAGGAGACATAGCGGCAGGTCCGGCTTATCGGTTCACACAATGGCTGGAACTGGTTCGTAAGCGCAGTGGCAAATATCGCTCCTCTGGTTTCCCTAACCGCCCGCCCAGAATCGATACTATGCCATTCTGTTCAGGAGAATCAACTGTTGATTCCAGAAGTTCTTTGCCTGTTGAGCAAGCTACAGAAATAAGTTTGTGGGAAAGACTTGGTAAAGCTGCTATGATGGATATTGAATCATGTTCTTTTTCTTGGGACATGCTTTCCTCACTTCACCATACTGAACATAGTAGTAGCAATGATCATTCTGAGGATGAAATGAGTAAAGCTCTTGAGGTCACCGTGAATTCTGGAGGGGTTGTCTTCTTTGCTCTATTCAACTGGCCTGAGAATGATGATTATTTCCTGAAGGAGGGAGCAGCAGTTATAAAGTTTTCATCTTCAAGAGTGGCCACACAATCAGAACGTCTTGGTTACGAATTCGCAAAGTGGCTAGGAGTTCGAACTCCACAGGCTAGAGTCATTCACAATTCTAGTACGGAGTGGCTTCAGATTAAGGAAGCTGCAGAAAAAGCAAGAGATGCAGCAATTTCAGAAGGAGATGAAGTTGGTGAAGTCACATGTTCAGAGCTTTTAGAAGCTCTTGAACTTAGCCGATGCCTCTTTCTGATGAATTATGTACATGGATCTCCTCTCTTGGAAAGCTCAAGTGCATTTGACTCACGAGAAGCTGCAGAAAAGACAGCAGCAGCCCTTGGCAGGGTCTTGATGTTGGACCTTGTCATTAGAAATGAAGATAGACTTCCTTGTCGTCAGCTCAGATGGCGTGGAAATCCCGCAAATCTATTGTTGGCCGACAAAATGGCCTCTACTGACATGGATGCATTGGAGGAAGCATTTGATTCTGCAATCAAGCGATATAGGCCTAGGGTAATTAGGGCTCTTCAGAAAGAAAGAAGGGCGACATCAGTTGACAGCAGATTGAGCCCTCATAATTCAGGATTGGTATCACAGAGTTCTGATCTTTCTGATGCCATAGGATCACCATCATCGAGCAACACTAGTCTGGAGGGTCAAGCTTTGAATCAGTCAGGTCTTTCAGATTTTCATATTGTGGCAATCGACTCTGGAGTTCCTCGCAGACCACCAGCAGGAAAACGTGCAAATGACCAGGCAAATTATCCAAAACTGGTTGAGCTCATGCTCAACAGCTCCAAGTATTCCTTGAATCTATTACATGAGATAACAGGAGGGAAGTTAGGATTTGCTTCAGATGATACTGAAACAGCAACTGATATACTTTTGACTGAGATGGCTTCAGTTGTTCATGAATTTCGTCGTGGGTTTCGAGCTGCACTAAGAGACTTGCAGGGTTTCCATATATTCCTACTCACACTCCACCAAAAACTGGATGGCCTCTTACGAGTATTTCTGAATATTGTAAATAGAAATTCCTGTGTTGATTTTGACAGAGAGGATTTGGGGGCCTCTGAGGCACAGTCGCAGGCTCCTGTAATAGGTCATTGTCCCTCTCCACCAAGTAAGGAACGGGTTATTAATGATAATCATCCAGATTTGAGTGACCCAGAGGTACAGAGAGCAGCTCCTAGGTTATCATCTTCTGGAGTTAGAGAAAGCTCAGACTCTAGTTCTCCCATCTCTCGAGAAGCTTGGCATGGGAAGTTCAGCAGAGGGAGTGTGGAGTCACTCCGAAGCCTGCGATTGACAACGAAGCTCCGTGACTTTCACAGATTTGCCAAGGTTGATGCAGAATCAAGCAAAGAGTTGGAACAATGGAATGAAATGCTAAGAAATGATGCAGTTAAATTATGCCAAGAGAACAATTTCAATTCAGGTTTCTTCGAGGGTAATGATAATAATGGTGTTGTTGATGCTTATGAGTTGAAGGTCAGGCTTGAGCACATTCTTGAGAGGATAGCATTGATATCTGATGCTGCAAATACAGAGCGACCATCTTCAATTACAGCGAGTCTCTTCATTGGTGGGGCCCTTGCTGCAAGATCTGTGTACACACTACAACATTTAGGAATTACACACATATTGTGCTTGTGCTCCAATGAGATTGGACAGTCAGATTCTCAGTATCCTGACCTATTTGAGTACAAAAATTTTTCTATTTCTGACAGTGAAGACACAAACATCAGCAGCATATTTGAAGAAGCTTCTGTGTTCATTGATCATGTTGAACAAACTGGCGGGAGGGTTCTGGTTCATTGCTTTGAAGGGAGAAGTAGAAGTGCTACGTTAGTTCTTGCTTACTTGATGCTCAGGAAGAACTTCACTCTATTAGAAGCATGGAATGCCCTAAAACGAGTACACCGCCGAGCGCAGCCCAATGATGGGTTTGCCAGGACCCTCCTGGACCTGGACCGCAAACTGCATGGAAAGGTTTCAATGGAGTGGCATCAGCGAAAACCGCCAATGAAAGTTTGCCCCATCTGTGGGAAAAATGCTGGCTTGAGCAGCAGCTCGCTTAAGCTTCATTTGCAGAAATCACACAAGAAGCTATCATCAGGGAGCGTGGACAGTGCTATGACTATGGAGATCCAAAAGGCTATAAGTGCTCTCAAGATTAGCCGAGGTGGGAGTGTCAGCCCTACACAGAGGCAGTCTAATTCAGTCATGGATGAATAG 2796 0.4489 MVKDQKEEPAIITNTTPHQEEKDPEFGSEDLLESPLPLTVTSRVLYMLGDIAAGPAYRFTQWLELVRKRSGKYRSSGFPNRPPRIDTMPFCSGESTVDSRSSLPVEQATEISLWERLGKAAMMDIESCSFSWDMLSSLHHTEHSSSNDHSEDEMSKALEVTVNSGGVVFFALFNWPENDDYFLKEGAAVIKFSSSRVATQSERLGYEFAKWLGVRTPQARVIHNSSTEWLQIKEAAEKARDAAISEGDEVGEVTCSELLEALELSRCLFLMNYVHGSPLLESSSAFDSREAAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKMASTDMDALEEAFDSAIKRYRPRVIRALQKERRATSVDSRLSPHNSGLVSQSSDLSDAIGSPSSSNTSLEGQALNQSGLSDFHIVAIDSGVPRRPPAGKRANDQANYPKLVELMLNSSKYSLNLLHEITGGKLGFASDDTETATDILLTEMASVVHEFRRGFRAALRDLQGFHIFLLTLHQKLDGLLRVFLNIVNRNSCVDFDREDLGASEAQSQAPVIGHCPSPPSKERVINDNHPDLSDPEVQRAAPRLSSSGVRESSDSSSPISREAWHGKFSRGSVESLRSLRLTTKLRDFHRFAKVDAESSKELEQWNEMLRNDAVKLCQENNFNSGFFEGNDNNGVVDAYELKVRLEHILERIALISDAANTERPSSITASLFIGGALAARSVYTLQHLGITHILCLCSNEIGQSDSQYPDLFEYKNFSISDSEDTNISSIFEEASVFIDHVEQTGGRVLVHCFEGRSRSATLVLAYLMLRKNFTLLEAWNALKRVHRRAQPNDGFARTLLDLDRKLHGKVSMEWHQRKPPMKVCPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKAISALKISRGGSVSPTQRQSNSVMDE* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0033 931 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 769 825 IPR000387 GO:0016311|GO:0016791
Vvi17g0033 931 FunFam Dual specificity protein phosphatase PHS1 676 850 - -
Vvi17g0033 931 MobiDBLite consensus disorder prediction 373 405 - -
Vvi17g0033 931 CDD DSP 705 842 - -
Vvi17g0033 931 Gene3D Protein tyrosine phosphatase superfamily 687 859 IPR029021 -
Vvi17g0033 931 Coils Coil 929 931 - -
Vvi17g0033 931 MobiDBLite consensus disorder prediction 1 32 - -
Vvi17g0033 931 SUPERFAMILY Protein kinase-like (PK-like) 61 438 IPR011009 -
Vvi17g0033 931 ProSiteProfiles Dual specificity protein phosphatase domain profile. 704 849 IPR020422 GO:0006470|GO:0008138
Vvi17g0033 931 SMART dsp_5 704 846 IPR020422 GO:0006470|GO:0008138
Vvi17g0033 931 Gene3D - 279 517 IPR036940 -
Vvi17g0033 931 ProSitePatterns Tyrosine specific protein phosphatases active site. 791 801 IPR016130 GO:0016311|GO:0016791
Vvi17g0033 931 Pfam Actin-fragmin kinase, catalytic 110 425 IPR015275 -
Vvi17g0033 931 Pfam Dual specificity phosphatase, catalytic domain 717 844 IPR000340 GO:0008138|GO:0016311
Vvi17g0033 931 MobiDBLite consensus disorder prediction 366 405 - -
Vvi17g0033 931 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 31 930 IPR035010 GO:0004721|GO:0009737|GO:0043622
Vvi17g0033 931 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 705 849 IPR029021 -
Vvi17g0033 931 MobiDBLite consensus disorder prediction 586 603 - -
Vvi17g0033 931 MobiDBLite consensus disorder prediction 545 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0033 Vvi-Chr17 250000 257710 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0033 20 915 Protein tyrosine phosphatase (PTP) family AT5G23720 68.102 0.0 1203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0033 K14165 - vvi:100242176 1769.21