Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0030 ATGTTGTCGGGGGTGAACGGCGTGGTGTGGATGGAGGGGAGAGAAGAGGAGGAGGAGGCTGCTTCATGGATCAGAAACAGCAATAACAACAACGGCGGCGGCAGCAGCTGTGGAGTGGTGGACAGTAGTAAAGATGATATGGGTTCTCTTTCTACCTTCAAATCCATGCTTGATGTTGATGATGAGTGGTACTTTACTGGCAATGCCGGTCAGAATCACCAGGAAATTAGAGATATTTCCTTCTCTACTAACCTGGCTGGAGCTGATAATTTGCTGCTGCACCCAGTGGACTCGTCGTCTTCGTGTTCTCCGTCGTCTTCAGTGTTCAACAATCTCGACCCATCTCAGGTGCAGTTCTTCTTGCCTCCAAAACCCACCTTATCTTCACTCCTCAACCTCATTTCCAACAACCCTTTAGAGCATAGCTTTGATATGGGTTGCGAGCAGGGGTTCTTGGAGACTCAAGCTCCAAATTCCCAGACTTTGGTTAATCGGGGAGGTGAGGTTTTGCCCCATTTCGCCGATATGGGCTCGCATGCCCAGATGAACACTCCTAATCTGATCTCTGAGCCTCAATTTGGAATCACCCGGGTGCTCCAACTGACCGAAAACAGTGCTCCTATTGGCGCCGGGTTCAGTTCATCGGGGATTCGAGGTTTTGAGGAGGGTTCTATGAACTCTTTGTTTGTGAATAGGTCTAAGTTGCTGAGGCCTCTCGAAACTTTCCCTTCAGTGGGTGCACAGCCCACTCTCTTTCAGAAGAGAGCAGCTTTGAGGAAGAATTTAGCTGATAATGGCAGCATTTTGGGGGGTTTGGGGCCTGAAGGTGGTCAGGTTTTGAGTGGGGTTGAGGATGATAAGGGAAAGAGGGAAATGGGTGAAGAAAATGATAGGAAGTGGAGAAACAGCAATGCAGAAGATATTGAGGATGCCAGCATTGATGCGTCGGGTTTGAATTATGATTCGGATGAGCTTACAGAGAATAACAAGATGGAGGAGAATGGCAAGAACAGTGGGAACAACTCAAATGCAAATAGCACTGTTACTGGTGGAGATCACAAGGGGAAGAAGAAGGGTCTCCCTGCTAAAAATTTAATGGCAGAGAGGCGCCGCCGGAAGAAGCTCAATGATAGGCTGTACATGCTGCGATCTGTTGTCCCAAAAATTAGCAAGATGGATAGGGCTTCAATCCTTGGGGATGCAATTGAGTACTTGAAGGAACTTCTGCAAAGGATCAACAACCTCCATAATGAACTGGAGTCCACCCCTCCTGGCTCGTCACTGACACCTACCACAAGCTTCCACCCTTTGACACCAACCCCTCCTACCCTTCCCTGCCGTATCAAGGAAGAACTTTGCCCAAGCTCATTATCAAGCCCGAATGGTCAACCTGCAAGGGTTGAAGTTAGGGCAAGAGAGGGAAGAGCTGTAAACATCCACATGTTCTGTGGCCGCAGACCAGGTCTATTGCTCTCCACCATGAGGGCTCTGGACAGCCTTGGGCTAGACATTCAGCAAGCTGTTATCAGCTGTTTCAATGGGTTTGCTTTGGATATTTTTCGAGCTGAGCAAAGCAAGGAAGGGCAGGACGTCCATCCTGAGCAAATCAAAGCAGTGCTCTTAGATTCAGCAGGTTTCCATGGCATGATGTAG 1653 0.4876 MLSGVNGVVWMEGREEEEEAASWIRNSNNNNGGGSSCGVVDSSKDDMGSLSTFKSMLDVDDEWYFTGNAGQNHQEIRDISFSTNLAGADNLLLHPVDSSSSCSPSSSVFNNLDPSQVQFFLPPKPTLSSLLNLISNNPLEHSFDMGCEQGFLETQAPNSQTLVNRGGEVLPHFADMGSHAQMNTPNLISEPQFGITRVLQLTENSAPIGAGFSSSGIRGFEEGSMNSLFVNRSKLLRPLETFPSVGAQPTLFQKRAALRKNLADNGSILGGLGPEGGQVLSGVEDDKGKREMGEENDRKWRNSNAEDIEDASIDASGLNYDSDELTENNKMEENGKNSGNNSNANSTVTGGDHKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINNLHNELESTPPGSSLTPTTSFHPLTPTPPTLPCRIKEELCPSSLSSPNGQPARVEVRAREGRAVNIHMFCGRRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDIFRAEQSKEGQDVHPEQIKAVLLDSAGFHGMM* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0030 550 MobiDBLite consensus disorder prediction 282 308 - -
Vvi17g0030 550 CDD bHLH_AtAMS_like 362 427 - -
Vvi17g0030 550 Pfam Helix-loop-helix DNA-binding domain 366 408 IPR011598 GO:0046983
Vvi17g0030 550 MobiDBLite consensus disorder prediction 268 363 - -
Vvi17g0030 550 MobiDBLite consensus disorder prediction 332 350 - -
Vvi17g0030 550 Gene3D - 353 422 IPR036638 GO:0046983
Vvi17g0030 550 CDD ACT_UUR-ACR-like 479 539 - -
Vvi17g0030 550 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 214 546 - -
Vvi17g0030 550 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 359 408 IPR011598 GO:0046983
Vvi17g0030 550 Coils Coil 398 422 - -
Vvi17g0030 550 SMART finulus 365 414 IPR011598 GO:0046983
Vvi17g0030 550 FunFam BHLH transcription factor 355 423 - -
Vvi17g0030 550 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 428 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0030 Vvi-Chr17 232858 236378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0030 51 523 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 51.534 1.97e-127 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi17g0030 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0030 - - vvi:100245749 961.444