Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0029 ATGGCGTCGTCGGAGGTCTCGATAAAGGGGAATTGCGGGCACGGAAGGGGAGAGAGCTTCACGTCGGGGTACAGCGAGCCTAACGATGGTGGAGTGTCGAGGAGCGTTGCGGAAGGGCAGAAAGGTCATTCCAGTGTTTCCGGTGCCGGAAAAGATTTTGAAACCGCGCTTTATACGGAGCTATGGCATGCTTGTGCCGGCCCTCTGGTGACTGTGCCTCGTGAGCGAGAGCGAGTTTTCTATTTCCCTCAGGGGCACATCGAGCAGGTTGAGGCATCGACCAATCAGGTGTCGGACCAGCAGATGCCAGTTTATGATCTTCCATCCAAGATCCTTTGTCGGGTGATCAACGTCCAATTGAAGGCTGAACCAGACACTGATGAGGTGTTTGCGCAAGTTACTTTGCTTCCTGAGCCAAACCAAGACGAGACCGCACAAGAGAAGGAACCTCTGCCACCGCCTCCACCGAGGTTCCATGTGCATTCATTCTGCAAGACCTTGACAGCCTCTGATACAAGCACCCATGGAGGATTTTCAGTGCTGAGGCGCCATGCAGATGAATGCCTTCCACAACTGGACATGTCCCGGCAGCCTCCAACACAGGAGTTGGTTGCCAAGGATTTGCATGGAAATGAGTGGCGTTTCCGGCATATCTTTAGGGGTCAACCTCGGAGGCACTTACTTCAAAGTGGTTGGAGCGTCTTTGTTAGCTCCAAAAGGCTTGTTGCCGGGGATGCCTTTATATTTCTCAGGGGTGAGAATGGAGAACTTCGTGTTGGAGTGAGGCGTGCTATGAGGCAACAGGGCAATGTTCCATCATCGGTTATATCTAGTCACAGCATGCATCTTGGTGTCCTTGCAACAGCATGGCATGCCAAATCAACTGGAACCATGTTCACTGTTTATTACAAACCTAGGACAAGCCCTGCAGAGTTTATTGTTCCCTTTGATCAATACATGGAATCCGTCAAGAACAATTATTCAATAGGGATGAGGTTCAAAATGAGATTTGAAGGTGAAGAAGCTCCAGAGCAGAGGTTTACGGGCACCATAGTTGGGATTGAAGATGCTGATCCCAAAAGGTGGCGAGATTCGAAGTGGAGATGTCTAAAGGTGAGATGGGATGAAACTTCTACTATCCCACGTCCAGATAGAGTTTCCCCCTGGAAAATAGAACCCGCTGTGACTCCACCTGCATTGAATCCCCTTCCAGTGCCCAGACCAAAAAGACCCCGATCAAACATGGTGCCTTCATCTCCTGATTCATCTGTCCTCACAAGGGAAGGTTCATCTAAAGTAACTGTAGACCCTTCACCAGCAAGTGGCTTTTCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCACTTTTGCTGAGAGTAATGAATCAGACACTGCTGAAAAGTCTGTTGTGTGGCCTCCTTTGCTAGATGATGAAAAGATTGATGTGGTTTCCACATCCCGAAGATTTGGATCAGACAACTGGATGCATTTAGTGAGACATGAACCAACTTGCACGGATCTACTATCTGGGTTTGGGGCTCGGACTGATTCCTCACATGGGTTCTCTTCATTTGTTGATCAAAATGATGTTGCTGCCAACACGATGAAAAAACATCTAGAACATGAAAGCAAGTTTAACTTGCTGGCAGGCCCATGGTCCATGATGCCTTCTGGCCTCTCTCTTAATTTGCTGGAGTCTAGCATTAAGGTACCTGTACAAGGCAGTGACATGCCTTACCAAACACGGGGGGATGCTAGGTTTGGTGGGTTCAGTGAGTATCCCACACTACATGGTCATAGAGTTGAGCTACAGCAAGGAAACTGGTTGATGCCTCCACCGGCTCAATCACATTTTGAGAATTTTGCTCATTCAAGAGAGCTAATGCCGAAACCTATTTTGGTTCAGAAGCAAGAGGCTGTGAAACCCAAGGATGGAAACTGCAAGCTCTTTGGCATTCCTCTAATTGGTAATCCTGTTATATCAGAACCAGCAATGTCATACAGAAGCATGACAAATGAGCCAGCAGGTCATTTACATCTTGCGCCTAGTGCATTTGATTCTGATCAAAAGTCTGAACAGTCAAAAGGTGCTAAATCAACCGATAATCCTCTGGCTGTTAGTGAGCAGGAGAAACCATGCCAAACTTCTCTCCCTCTTTCAAGAGATGTTCAGGGAAAAGTTCAGAGTGTTTCAACAAGGAGTTGCACCAAGGTTCACAAGCAGGGAATTGCTCTTGGTAGATCTGTGGACCTTACTAAATTCAACAACTATGATGAATTGATTGCTGAATTGGATCAGTTGTTCGAATTCGGGGGCGAGTTAATGGCTCCCAAGAAGAATTGGCTGATTGTGTATACTGATGATGAGGGTGATATGATGCTTGTTGGAGATGATCCATGGCAGGAATTTTGTGGCATGGTTCGGAAGATCTACATTTACACCAGAGAGGAGGTGCAAAGGATGAATCCAGGGACCTTAAATTCAAAGAATGACGATAATCCATCAGTTGCAGAAGGCATGGATGCAAAAGAAGTGAAACGTCAGCCGGTTCCTTTGACATCAAACCTAGAGAATTGCTAG 2589 0.472 MASSEVSIKGNCGHGRGESFTSGYSEPNDGGVSRSVAEGQKGHSSVSGAGKDFETALYTELWHACAGPLVTVPRERERVFYFPQGHIEQVEASTNQVSDQQMPVYDLPSKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQDETAQEKEPLPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPQLDMSRQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAKSTGTMFTVYYKPRTSPAEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPKRWRDSKWRCLKVRWDETSTIPRPDRVSPWKIEPAVTPPALNPLPVPRPKRPRSNMVPSSPDSSVLTREGSSKVTVDPSPASGFSRVLQGQEFSTLRGTFAESNESDTAEKSVVWPPLLDDEKIDVVSTSRRFGSDNWMHLVRHEPTCTDLLSGFGARTDSSHGFSSFVDQNDVAANTMKKHLEHESKFNLLAGPWSMMPSGLSLNLLESSIKVPVQGSDMPYQTRGDARFGGFSEYPTLHGHRVELQQGNWLMPPPAQSHFENFAHSRELMPKPILVQKQEAVKPKDGNCKLFGIPLIGNPVISEPAMSYRSMTNEPAGHLHLAPSAFDSDQKSEQSKGAKSTDNPLAVSEQEKPCQTSLPLSRDVQGKVQSVSTRSCTKVHKQGIALGRSVDLTKFNNYDELIAELDQLFEFGGELMAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIYIYTREEVQRMNPGTLNSKNDDNPSVAEGMDAKEVKRQPVPLTSNLENC* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0029 862 FunFam Auxin response factor 161 265 - -
Vvi17g0029 862 MobiDBLite consensus disorder prediction 1 49 - -
Vvi17g0029 862 ProSiteProfiles B3 DNA-binding domain profile. 163 265 IPR003340 GO:0003677
Vvi17g0029 862 Pfam Auxin response factor 289 371 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi17g0029 862 MobiDBLite consensus disorder prediction 395 413 - -
Vvi17g0029 862 MobiDBLite consensus disorder prediction 382 444 - -
Vvi17g0029 862 Gene3D - 160 265 IPR015300 -
Vvi17g0029 862 Pfam AUX/IAA family 727 821 IPR033389 -
Vvi17g0029 862 CDD B3_DNA 161 263 IPR003340 GO:0003677
Vvi17g0029 862 Gene3D - 326 397 - -
Vvi17g0029 862 MobiDBLite consensus disorder prediction 825 862 - -
Vvi17g0029 862 FunFam Auxin response factor 326 398 - -
Vvi17g0029 862 Gene3D - 731 825 - -
Vvi17g0029 862 SUPERFAMILY CAD & PB1 domains 735 813 - -
Vvi17g0029 862 SMART B3_2 163 265 IPR003340 GO:0003677
Vvi17g0029 862 MobiDBLite consensus disorder prediction 678 723 - -
Vvi17g0029 862 SUPERFAMILY DNA-binding pseudobarrel domain 159 292 IPR015300 -
Vvi17g0029 862 ProSiteProfiles PB1 domain profile. 736 818 IPR000270 GO:0005515
Vvi17g0029 862 MobiDBLite consensus disorder prediction 415 444 - -
Vvi17g0029 862 Pfam B3 DNA binding domain 163 264 IPR003340 GO:0003677
Vvi17g0029 862 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 56 825 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi17g0029 862 MobiDBLite consensus disorder prediction 689 723 - -
Vvi17g0029 862 FunFam Auxin response factor 731 825 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0029 Vvi-Chr17 225273 230240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0029 1 861 B3 DNA Binding Superfamily AT5G62000 67.506 0.0 1152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vvi17g0029 AUX_IAA 2.9e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0029 - - vvi:100268072 1737.62