Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0028 ATGCAGCTGGCCAAACTTGACGATTCTCCCATGCTTCGCAACCAAATTGAGTGCTTGGAGGAGAATGCTGAGTCATTGAAGGAAAGAACAATGAAGTTCTACAAAGGCTGCCGAAAGTACGCAGAAGGACTTGGAGAGGGATACAATGGAGATGTTGCTTTTGCAAACGCCCTTGAAGCCTTTGGAGGCTGCCATAATGATCCTCTTAGTGTTGCTTTTGGGGACTCTGTTGTCAAAAAATTCACAGGTGCTTTGAGAGAAATTGGGACATACAAGGAAACCCTTCGGGCAGAGGTAGAGCACGTTCTAACTGATAGGTTGCTACACTTTGTTGATGTTGATCTGCATGATGTCAAGGAAGCCCGAAAACGTTTTGACAAGGCTATCCCTATGTATGACCAGGCACGTGAGAAATTTCTATCATTAAGGAAAAGTACTAGAATGGATATAGCTCAAGCCACAGAGGAGGAACTTCACAATGCAAGGTCCATATTTGAGCAAGCCCGGTTCAATCTGGTCAGTGCTATCTCTAATGTCGAGGCAAAAAAGAGGTTTGAGTTTTTGGAGGCTGTCAGTGTAACAATGGCTGCACATCTTCGTTTCTTCAGACAGGGATATGAGCTATTGAATCAGATGGAGCCTTATATTAACCAGGTCTTGGGTTATGCACAACAGTCAAGGGAAAGTTCCAACTATGAGCAAGCATCTCTTATTGAAAAAATGCAAGACTACATAAGGCAAATTGATTACAAAAGTAAACTGGCTCTAAATGGATCTTATGCTTCTCCCAATGATGTTGGTATGCAACCTTTCAATAGAAAATCGCATAAAGAGATAGAAGCAGTTATGCAATCTGCTGCAAAGGGAAAGGTTCAAACCATTCGACAAGGATATCTTTCAAAACGTTCCTCAAATTTGAGGGGTGACTGGAAGAGAAGGTTCTTTGTTCTTGATAGCCGAGGCATGTTGTACTACTATCGCAAACAATGGAACAGGTCATTTGTAAGTCATTATCTGGAAGACATTTTTCAACATTCCAATGAGCCTGGTTCTGGGCTGCTGAGTCGCTGGCTATCTTCTCATTACCATGGTGGTGTACATGATGAGAAATCTGTCACACAGCACACTGTGAACTTACTGACAGCAACAATAAAGCTTGATGCAGATCAGTCAGATTTGAGGTTCTGCTTCAGGATCATTTCACCAACAAAGAACTATACTTTGCAGGCAGAGAATGCACTGGATCAAATGGACTGGGTTGAAAAGATAACTGGAGTAATAGCTTCTTTGTTGAGTTCCGACGCACTTGAAAGGCGTCTCTCTGGTTCTTCAACTGGAAGCAGCGATCAACAGCCTGCTAACCAAAGTTGTTCACCAGGAAGTTCATCTCATTTGGATCAGACTGTAATTGAAGAGCATGCGTCTAAGAATCTTACTTCTGGAAACTATGCGCGTGCATCTAGAAGTCTGCAACAGCGAAAATGCAGTGGAAAAAATGAGAAGCCAATTGATGTGTTGAGAAGAGTACGTGGGAATGACAAATGTGCTGATTGTGGTGCACCTGAACCTGATTGGGCATCCTTAAATCTGGGTGTTCTTATCTGCATCGAATGCTCTGGCATTCACCGTAATCTTGGTGTGCATATATCAAAGGTTAGATCACTGGTACTTGATGTAAAAGTGTGGGAACCTTCTGTTCTGACATTGTTCCTGGCACTGGGTAATAACTACGCAAATTCAATCTGGGAGGACTTGTTGAATCCTGATGATACGCCTGTGGATTCCCCGACATCTGATAAATCCAAGCTGTCGCTTATGAGCAAACCTGGTCATGATGATCCTATTTCAGTAAAGGAGATTTTCATTCATGCAAAGTATGCAGAAAAACGTTTTGTTCGCAAGATAAAGGACAGTCAGCATCTTCATTCAATTGCACAAAAAATGTGCAGAAGTGTGCGTTATAATGACACGAAAGCAGTTTACCGCAATATTGTCAGTTCTGAAGTTGATGTCAATGCTATCCATGGGAAAGCATCATCTAACACGTTCTTAACTCTAGCTGAAGTAATGAAGTTGCAAGAGCAGGTCAGCGTCGATAATAAATTTGATTTCTTAGTAGATAGTTCTTTGGGTAAGGCGTCCTCAAGCTCTTCAGACAAACCCAGTACAACCGAAGATCAGTCCATGGAGGGGTGTCATGATGGTTGTTCGCTACTTCACCTTGCATGCCAAGCTGCAGACATTGGTATGGTGGAGCTACTTCTACAGTATGGAGCAGACATAAATGCTTCTGATTCTATGGGTCAGACCCCTCTGCATCATTGCATCATCAGAGGGAGAACTGCAATTGCAAAAATACTGCTGAAAAGGGGAGCTGATCCACAAGCTGTAGACAAGGAAGGTAAAACCCCTCTTCGGCTCGTAGCTGAATCAACCATTGATGACAGCGAGGTCCTAGCACTCTTAAAGCAAACAAACAGATGA 2484 0.4279 MQLAKLDDSPMLRNQIECLEENAESLKERTMKFYKGCRKYAEGLGEGYNGDVAFANALEAFGGCHNDPLSVAFGDSVVKKFTGALREIGTYKETLRAEVEHVLTDRLLHFVDVDLHDVKEARKRFDKAIPMYDQAREKFLSLRKSTRMDIAQATEEELHNARSIFEQARFNLVSAISNVEAKKRFEFLEAVSVTMAAHLRFFRQGYELLNQMEPYINQVLGYAQQSRESSNYEQASLIEKMQDYIRQIDYKSKLALNGSYASPNDVGMQPFNRKSHKEIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQWNRSFVSHYLEDIFQHSNEPGSGLLSRWLSSHYHGGVHDEKSVTQHTVNLLTATIKLDADQSDLRFCFRIISPTKNYTLQAENALDQMDWVEKITGVIASLLSSDALERRLSGSSTGSSDQQPANQSCSPGSSSHLDQTVIEEHASKNLTSGNYARASRSLQQRKCSGKNEKPIDVLRRVRGNDKCADCGAPEPDWASLNLGVLICIECSGIHRNLGVHISKVRSLVLDVKVWEPSVLTLFLALGNNYANSIWEDLLNPDDTPVDSPTSDKSKLSLMSKPGHDDPISVKEIFIHAKYAEKRFVRKIKDSQHLHSIAQKMCRSVRYNDTKAVYRNIVSSEVDVNAIHGKASSNTFLTLAEVMKLQEQVSVDNKFDFLVDSSLGKASSSSSDKPSTTEDQSMEGCHDGCSLLHLACQAADIGMVELLLQYGADINASDSMGQTPLHHCIIRGRTAIAKILLKRGADPQAVDKEGKTPLRLVAESTIDDSEVLALLKQTNR* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0028 827 SMART arf_gap_3 500 639 IPR001164 GO:0005096
Vvi17g0028 827 ProSiteProfiles Ankyrin repeat region circular profile. 734 765 - -
Vvi17g0028 827 CDD ArfGap 503 626 - -
Vvi17g0028 827 CDD BAR_SFC_plant 15 215 IPR035670 -
Vvi17g0028 827 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Vvi17g0028 827 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Vvi17g0028 827 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
Vvi17g0028 827 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Vvi17g0028 827 ProSiteProfiles Ankyrin repeat profile. 734 766 IPR002110 GO:0005515
Vvi17g0028 827 SMART 5bar 1 218 IPR004148 GO:0005515|GO:0005737
Vvi17g0028 827 SUPERFAMILY ArfGap/RecO-like zinc finger 499 634 IPR037278 -
Vvi17g0028 827 SMART ANK_2a 734 763 IPR002110 GO:0005515
Vvi17g0028 827 SMART ANK_2a 767 796 IPR002110 GO:0005515
Vvi17g0028 827 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 639 IPR001164 GO:0005096
Vvi17g0028 827 SUPERFAMILY Ankyrin repeat 732 812 IPR036770 -
Vvi17g0028 827 SMART PH_update 293 430 IPR001849 -
Vvi17g0028 827 Gene3D Arf GTPase activating protein 481 636 IPR038508 -
Vvi17g0028 827 Pfam PH domain 294 427 IPR001849 -
Vvi17g0028 827 Pfam Putative GTPase activating protein for Arf 503 633 IPR001164 GO:0005096
Vvi17g0028 827 MobiDBLite consensus disorder prediction 440 465 - -
Vvi17g0028 827 SUPERFAMILY PH domain-like 293 445 - -
Vvi17g0028 827 Coils Coil 9 29 - -
Vvi17g0028 827 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 482 640 - -
Vvi17g0028 827 Gene3D - 637 825 IPR036770 -
Vvi17g0028 827 PANTHER CENTAURIN/ARF 5 824 IPR045258 GO:0005096
Vvi17g0028 827 MobiDBLite consensus disorder prediction 710 729 - -
Vvi17g0028 827 ProSiteProfiles Ankyrin repeat region circular profile. 767 799 - -
Vvi17g0028 827 Pfam Ankyrin repeats (3 copies) 739 811 IPR002110 GO:0005515
Vvi17g0028 827 CDD PH_ACAP 295 432 - -
Vvi17g0028 827 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Vvi17g0028 827 Gene3D - 285 441 IPR011993 -
Vvi17g0028 827 ProSiteProfiles Ankyrin repeat profile. 767 799 IPR002110 GO:0005515
Vvi17g0028 827 Pfam BAR domain of APPL family 6 231 IPR004148 GO:0005515|GO:0005737
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0028 Vvi-Chr17 201292 212911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0028 501 633 C2H2 Transcription Factor Family AT4G21160 39.286 1.05e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0028 K12489 - vvi:100254173 1575.84