Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0024 ATGGCGCCGGAGCATAGCGACGTGCATGAGAATGCTGTGGGGGTGGGGGTGGGGGTGTCCAATGGGATTGATGGAGGTGATGATAAGAATAAAGTAGCCAGGCATCCTCGGTGGACCAGACAGGAAACGTTTGTCCTCATTCAAGGGAAGAAGATTGCAGAGAATCGGGTTAGGAGGGGGAGGAGATCCTCTTCTGCTTTTGGGTCCGACCAGGTGGAACCCAAGTGGGATTCAGTCTCATCTTATTGCAGAAGGCATGGTGTCAACAGGGGTCCTGTCCAGTGCCGGAAGAGGTGGAGCAATCTCGTTGGGGACTTCAAGAAGATCAAAACATGGGAGTCTGAGGTCAGGGAGGATGCTGAATCGTTCTGGGTGTTGAGGAATGATTTGAGGAGGGAGAGGAAGTTGCCGGGCTTCTTTGATAGGGAGGTTTACGATGTCTTGGATGGAAGGGCGTTTAGTGCAACAGCCTTCCCGCTGGCGCTGGTCTCTGCAATGCCAGATGTGAAGAGCAGCGATGGAATGGAGCCTGTGGCAGTGGCTGTGGAGGCAGAGGAGGAGGAGGGGGAGGAGGAAGAGGAGGAGGAGGAAGCAGTTTTCGACAGCGGTAGACAGGCTGCAGCAGAAGACGGTCTGTTTTCGGATTCTGAACAGTTGGGGCAGGAGGAAGCCAGTGGGAGTTTGGAGAAGGAAACCACTGCTGCTACAGAGAGTCCTACACAGACAACCCCTATACCATTGCCTATTTCAGAGAGGAAGTTTCAAAAGTTCTATCAGGGATGCACCTCTCAAGGAAAACAGAAAGGAAAACAACACTGCTCAGATGCTTGGACAGGACCTATGTCTGAGGAGAGGTGGAAGCGAAGGCGGGTTTCGGTGGACGGGTGTGCGGAAACTAACATGGAAGAGCAGCTGATCAAAGTTCTGGAAAGAAATAGTAAAAGGCTCAATGCACAACTTGAAGCTCAGAATGTAAACTCTCAACTGGATAGGGATCAGAGGAAGGATCATGCCAACAGTTTAGTTGCTGCTCTGAGTAAGCTCACAGATGCTATAGTAAGAATTGCTGATAAATTATAG 1080 0.5102 MAPEHSDVHENAVGVGVGVSNGIDGGDDKNKVARHPRWTRQETFVLIQGKKIAENRVRRGRRSSSAFGSDQVEPKWDSVSSYCRRHGVNRGPVQCRKRWSNLVGDFKKIKTWESEVREDAESFWVLRNDLRRERKLPGFFDREVYDVLDGRAFSATAFPLALVSAMPDVKSSDGMEPVAVAVEAEEEEGEEEEEEEEAVFDSGRQAAAEDGLFSDSEQLGQEEASGSLEKETTAATESPTQTTPIPLPISERKFQKFYQGCTSQGKQKGKQHCSDAWTGPMSEERWKRRRVSVDGCAETNMEEQLIKVLERNSKRLNAQLEAQNVNSQLDRDQRKDHANSLVAALSKLTDAIVRIADKL* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0024 359 Coils Coil 306 326 - -
Vvi17g0024 359 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 13 359 - -
Vvi17g0024 359 MobiDBLite consensus disorder prediction 182 246 - -
Vvi17g0024 359 Pfam Myb/SANT-like DNA-binding domain 36 125 IPR044822 -
Vvi17g0024 359 ProSiteProfiles Myb-like domain profile. 30 103 IPR001005 -
Vvi17g0024 359 MobiDBLite consensus disorder prediction 182 199 - -
Vvi17g0024 359 MobiDBLite consensus disorder prediction 1 35 - -
Vvi17g0024 359 Gene3D - 38 108 - -
Vvi17g0024 359 MobiDBLite consensus disorder prediction 218 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0024 Vvi-Chr17 179440 180948 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi17g0024 Myb_DNA-bind_4 1.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0024 - - vvi:100266238 660.218