Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0022 ATGCCATTTGAAGTCATGGACCCGAGGGGTGTATCTGCATCGTCCCCCTTGTTTGATGACATCTGTTTTCCTGCTGAGAGACAAGTTGGATTTTGGAAGCCCAAAATCATGTCTGATCACCATGCAGAAGGAGATGGAGTAGCACGAATACCTGGCAGCAAGTCGGTTACTTCATCGCCCTTGGAAAAACTTTTACCAGTTGGATCAAAGTCAGTGGATTACTCGGAAGGACCAGAGTCCTATCTGGCTAGAGACCAGAAAGAAAAACTGCAGCCTGCTTCCTCTTACGTGGAAGTAAAAAAGACTAGTATCAATGGAGCCCTATATGAGAGCAGTCTCTTTTCAAGCTCATTGTCTGAAATATTTAATAGGAAGTTGAGAGTATCGACCAGTGATGTTCTATCTCATCAGTCTGCTGGCACTGTTGCTCCTCACTCTGAGGAAGAGAAGCTCTTTAAATCCCTTGAAGAAATTGAGGTTCAAACCCTCGGAAATCTCCTTCCTGATGAAGATGAGCTATTTTCGGGAGTGGTTGATGACATGGGGTATAATGCTCATGCAAATAATGGTGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAACTAGAAGGGGATGATCATTTGTGTATCAGCCAAAGACATTCTGATTTTAATGGGGGAATTCCCAACAGTCAAGGAGGTTCTAATGGCTCACTTGCAAGTGAACACCCTTATGGTGAACACCCTTCCAGAACACTTTTTGTGCGAAATATCAACAGCAATGTTGAAGATTCAGAATTAAGGGATCTTTTTGAGCAATATGGAGACATCCGAACACTTTACACAGCTTGCAAGCATCGCGGGTTTGTTATGATTTCTTATTATGATATAAGGGCAGCCAGAAATGCAATGAGAGCCCTTCAGAATAAGCCACTGAGACGGAGGAAACTTGATATTCATTATTCAATTCCAAAGGACAATCCTTCGGAGAAAGATATCAACCAGGGTACCCTTGTGGTATTTAACCTTGATTCATCTGTTTCCAATGATGATCTTCGTCAAATTTTTGGCATTTATGGAGAAATTAAGGAAATCCGGGAAACTCCACACAAGCGGCATCACAAATTCATTGAATTTTTTGATGTTAGAGCTGCAGAAGCTGCTCTTCGTGCATTGAACAGGAGTGATATTGCTGGGAAACGGATCAAGCTTGAACCAAGCCGTCCAGGGGGTTCAAGACGGTGTTTGATGCAACTGTGCTCTTCTGAACTGGAGCAAGATGAATCCATTTTGTGTCAAAGCCCTGATGACAACTTATCATCTGGTTGCATGGCGGTTTCTCCTGGAATAAAGACATCTAGCTGCATGGATAATGTATCTATCCAGGACTTGCATTCTGCAGTTCGAATGCCTATTGGTTCATTTGTTGAAAATGCCACTTCCCATGGGAGTTCTAGTGTTCCAAACACCTTGCCCTCACCGATGAGAGTGGTATCCATCATCAATGAATTTGGTCTTGGTGAAACCAGCAACACATTGGATCAGATGAAGTTTGGCAACCAAAGTTTTCCTAATTACCATCCTCATTCCCTCCCTGAGTATCATGATAATTTAGCCAATGCTATTAGATACAACTCTTCTAGCACAATTGGGGACATGACTGGTCATGTTGGTCCGAGAATAACAGAGGGAATTGACAACAGGCACATCCACAGAGTGGGTTCAAATGGGCACCCGATTGAACTTAATGGAGGGGCTTTTGGCTCATCTGGAAATGGGAGTTGCCCTGTTCATGGACTTCATCGTGCATGGGGAAACTCCAGCTCGTATCAGCATCATTCTTCAAGTCCCATGATCTGGCCAAATTCTCCATCATTTAGTAATGGTGTTCATGCTCAACGGCCCACACAAGTACCCGGATTTCCTAGACCTCCACCTCATATGCTGAACATTGTTTCACCTGTGCACCACCATCATGTTGGATCAGCACCAGCTGTTAATCCCTCCCTTTGGGATAGACGGCATGCCTACAGTGGAGAATCTCCTGAAACTTCTGGTTTTCACTTGGGTTCTCTTGGGAGTGTGGGTTTTCCAGGAAGTTCTCCATTGCATCCCTTGGAAATGGCTTCTCACATCTTTCCCCATGTTGGTGGAAATTGCATGGACATATCTGCAAATGTCGGGCTGCGCTCTCCTCAGCAGATTTGCCATGTATTCCCTGGAAGGAATTCAATGCTTTCAATTCCCTCTTCTTTTGATTTGCCTATGGAGCGTGTGAGAAACCTCTCACACCGTAGAACTGAAGCCAATTCCAACCATACTGATAAGAAACAGTATGAACTTGACATTGATCGTATATTACGTGGGGAAGACTGCCGAACGACACTGATGATAAAGAACATTCCCAACAAGTATACTTCAAAAATGCTTCTTGCTGCAATTGATGAACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAAAACAAATGCAATGTGGGCTATGCTTTTGTCAACATGATTGATCCTCTTCATATTGTTCCATTCCATCAGGCATTCAATGGTAAAAAGTGGGAGAAGTTCAACAGTGAGAAGGTGGCATCTCTTGCATATGCTCGAATTCAAGGAAAAACTGCTCTTATTGCTCATTTCCAAAACTCGAGCTTGATGAATGAGGATAAACGTTGCCGCCCTATTCTATTTCATACTGATGGTCCAAATGCAGGTGATCAGGAGCCATTCCCCATGGGTAGCAATATACGATCAAGACCAGGCAAAGCTCGAACTAGTGGGGGTGAGGAGAGTCAGCATCAAGGGAGCCCAACAACTTCTGCAAATGGAGAGGAATCTTCCAATGGAGCAGTCACTTTGTTGGGTTCTGCCAAGGACTCAGATTAA 2904 0.4353 MPFEVMDPRGVSASSPLFDDICFPAERQVGFWKPKIMSDHHAEGDGVARIPGSKSVTSSPLEKLLPVGSKSVDYSEGPESYLARDQKEKLQPASSYVEVKKTSINGALYESSLFSSSLSEIFNRKLRVSTSDVLSHQSAGTVAPHSEEEKLFKSLEEIEVQTLGNLLPDEDELFSGVVDDMGYNAHANNGDDFEDFDLFSSGGGMELEGDDHLCISQRHSDFNGGIPNSQGGSNGSLASEHPYGEHPSRTLFVRNINSNVEDSELRDLFEQYGDIRTLYTACKHRGFVMISYYDIRAARNAMRALQNKPLRRRKLDIHYSIPKDNPSEKDINQGTLVVFNLDSSVSNDDLRQIFGIYGEIKEIRETPHKRHHKFIEFFDVRAAEAALRALNRSDIAGKRIKLEPSRPGGSRRCLMQLCSSELEQDESILCQSPDDNLSSGCMAVSPGIKTSSCMDNVSIQDLHSAVRMPIGSFVENATSHGSSSVPNTLPSPMRVVSIINEFGLGETSNTLDQMKFGNQSFPNYHPHSLPEYHDNLANAIRYNSSSTIGDMTGHVGPRITEGIDNRHIHRVGSNGHPIELNGGAFGSSGNGSCPVHGLHRAWGNSSSYQHHSSSPMIWPNSPSFSNGVHAQRPTQVPGFPRPPPHMLNIVSPVHHHHVGSAPAVNPSLWDRRHAYSGESPETSGFHLGSLGSVGFPGSSPLHPLEMASHIFPHVGGNCMDISANVGLRSPQQICHVFPGRNSMLSIPSSFDLPMERVRNLSHRRTEANSNHTDKKQYELDIDRILRGEDCRTTLMIKNIPNKYTSKMLLAAIDEHHRGTYDFIYLPIDFKNKCNVGYAFVNMIDPLHIVPFHQAFNGKKWEKFNSEKVASLAYARIQGKTALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDQEPFPMGSNIRSRPGKARTSGGEESQHQGSPTTSANGEESSNGAVTLLGSAKDSD* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0022 967 MobiDBLite consensus disorder prediction 221 244 - -
Vvi17g0022 967 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 249 322 IPR000504 GO:0003723
Vvi17g0022 967 FunFam MEI2-like protein 5 isoform 2 238 332 - -
Vvi17g0022 967 SMART rrm1_1 335 403 IPR000504 GO:0003723
Vvi17g0022 967 SMART rrm1_1 250 318 IPR000504 GO:0003723
Vvi17g0022 967 SMART rrm1_1 793 869 IPR000504 GO:0003723
Vvi17g0022 967 MobiDBLite consensus disorder prediction 925 961 - -
Vvi17g0022 967 MobiDBLite consensus disorder prediction 221 237 - -
Vvi17g0022 967 PANTHER RNA RECOGNITION MOTIF-CONTAINING 54 955 - -
Vvi17g0022 967 FunFam Protein MEI2-like 1 333 428 - -
Vvi17g0022 967 Pfam RNA recognition motif 2 791 887 IPR007201 -
Vvi17g0022 967 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 251 315 IPR000504 GO:0003723
Vvi17g0022 967 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 336 401 IPR000504 GO:0003723
Vvi17g0022 967 SUPERFAMILY RNA-binding domain, RBD 246 408 IPR035979 GO:0003676
Vvi17g0022 967 Gene3D - 333 412 IPR012677 -
Vvi17g0022 967 SUPERFAMILY RNA-binding domain, RBD 793 877 IPR035979 GO:0003676
Vvi17g0022 967 CDD RRM1_MEI2_like 248 324 IPR034453 -
Vvi17g0022 967 CDD RRM3_MEI2_like 794 879 IPR034454 -
Vvi17g0022 967 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 334 407 IPR000504 GO:0003723
Vvi17g0022 967 MobiDBLite consensus disorder prediction 902 967 - -
Vvi17g0022 967 Gene3D - 237 332 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0022 Vvi-Chr17 158451 166530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0022 246 400 Eukaryotic Initiation Factors Gene Family AT1G71770 27.439 3.54e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0022 - - vvi:100261030 1931.38