LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi17g0019	ATGTCCGCTATGGTTTCAGCTCTCACTCAAGTCATTGGAAACACTGACAAAAACCCACTTCATGATCTTGGAAACCCATCACCAATCTCCCACCACTCCGCCACAACCCCACATGATCAACCTTCTCAGCTTCTTCAAGATCAAGGGAACCAGCTGAGGAGAAGACACTATAGGGGAGTAAGGCAAAGACCTTGGGGGAAGTGGGCAGCTGAGATACGTGATCCAAATAAGGCAGCTCGAGTATGGCTGGGCACTTTCGACACTGCTGAGGATGCTGCACTTGCCTATGATGAAGCTGCTCTTAGGTTCAAAGGAAACAAAGCCAAGCTTAACTTCCCTGAAAGAGTTCAAGGCCGAAGCGAATTAGGTTACCTCACAAATCGTCAAGACTTCCTTCTTCCTCAGCAACAACAGCTTCCCAACCCTGCTGTTCCTCCTCTTCCTCATCCATCCCTCCCTCGACCGTCATATCCCAATCTTCATCACTATGCTCAGCTCCTTCCAGGTGGAGGTGGTGATTTAAATCATGCTATGTCCAGTCTTTATGGTAGAGAAGCTTCTACTACGCAGTCTTTGTCAACTACATCTTCATCTTCTTCTACAACCTCTCATCCACAACACCATCAGCGAAGACGACAACGAGAAGAAGAAGAATTACAACAACCACAACTTCTACAATTTTCATCACTGTTTGGAAGTTCTTCTAGCAACGACCCTCACAATAACAGGAGAGATGACTGA	741	0.4669	MSAMVSALTQVIGNTDKNPLHDLGNPSPISHHSATTPHDQPSQLLQDQGNQLRRRHYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEDAALAYDEAALRFKGNKAKLNFPERVQGRSELGYLTNRQDFLLPQQQQLPNPAVPPLPHPSLPRPSYPNLHHYAQLLPGGGGDLNHAMSSLYGREASTTQSLSTTSSSSSTTSHPQHHQRRRQREEEELQQPQLLQFSSLFGSSSSNDPHNNRRDD*	247

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi17g0019	246	MobiDBLite	consensus disorder prediction	184	204	-	-
	Vvi17g0019	246	MobiDBLite	consensus disorder prediction	184	246	-	-
	Vvi17g0019	246	PANTHER	DNA-BINDING DOMAIN	42	221	IPR044808	GO:0003700\|GO:0009873
	Vvi17g0019	246	Pfam	AP2 domain	56	105	IPR001471	GO:0003700\|GO:0006355
	Vvi17g0019	246	SMART	rav1_2	56	119	IPR001471	GO:0003700\|GO:0006355
	Vvi17g0019	246	MobiDBLite	consensus disorder prediction	138	160	-	-
	Vvi17g0019	246	MobiDBLite	consensus disorder prediction	220	238	-	-
	Vvi17g0019	246	FunFam	Ethylene-responsive transcription factor 2	55	114	-	-
	Vvi17g0019	246	Gene3D	AP2/ERF domain	55	115	IPR036955	GO:0003700\|GO:0006355
	Vvi17g0019	246	CDD	AP2	56	114	IPR001471	GO:0003700\|GO:0006355
	Vvi17g0019	246	SUPERFAMILY	DNA-binding domain	56	114	IPR016177	GO:0003677
	Vvi17g0019	246	MobiDBLite	consensus disorder prediction	28	50	-	-
	Vvi17g0019	246	ProSiteProfiles	AP2/ERF domain profile.	56	113	IPR001471	GO:0003700\|GO:0006355
	Vvi17g0019	246	MobiDBLite	consensus disorder prediction	14	51	-	-
	Vvi17g0019	246	MobiDBLite	consensus disorder prediction	139	155	-	-
	Vvi17g0019	246	PRINTS	Ethylene responsive element binding protein signature	57	68	IPR001471	GO:0003700\|GO:0006355
	Vvi17g0019	246	PRINTS	Ethylene responsive element binding protein signature	79	95	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi17g0019	Vvi-Chr17	109025	110425	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi17g0019	1	141	AP2-EREBP Transcription Factor Family	AT5G61890	62.329	2.58e-49	160

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Vvi17g0019		AP2	1.1e-15	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi17g0019	-		-	vvi:100245655	368.237