Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0016 ATGATTTGGCATCATCAAAACGCAATTAGGAGAACCCTTAGGGTAACAAAAATATCTTCCATTATTCTCATGTTCAAGTCCCATAAAAAAAAACATTCTTCCTATGCACCTGAGAAGGGGGTTCTCTATGATGGAATATACATAATTGAGAAATGTTGGAGAAAAGTTGGAATTCAAAGGTATAAGGTTTGTAGGTACCTATTTGTTAGATGTGACAATGAACCCACCCCATGGACAAGTGATGAACATGGGGACCGACCTAGACCCCTTGCTAGAGATTCCGGAGTTAAATGTCACGGACTTGGTCTTTTCCTAAACTCGACAATACACTCCTATGGAAGTGGAAAAGAACTCCACCTGTCAGCCGTAAACTTGTGGACACTGGAAATTCCGTGA 396 0.4066 MIWHHQNAIRRTLRVTKISSIILMFKSHKKKHSSYAPEKGVLYDGIYIIEKCWRKVGIQRYKVCRYLFVRCDNEPTPWTSDEHGDRPRPLARDSGVKCHGLGLFLNSTIHSYGSGKELHLSAVNLWTLEIP* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0016 131 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 27 90 IPR045134 -
Vvi17g0016 131 Gene3D - 5 98 IPR036987 -
Vvi17g0016 131 SUPERFAMILY PUA domain-like 1 92 IPR015947 -
Vvi17g0016 131 ProSiteProfiles YDG domain profile. 1 70 IPR003105 -
Vvi17g0016 131 Pfam SAD/SRA domain 12 73 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0016 Vvi-Chr17 88282 89690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0016 9 90 C2H2 Transcription Factor Family AT5G39550 61.905 2.27e-32 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0016 K10638 - jre:109003133 131.339