Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0013 ATGGATCCCGACGCTTTCACGGCCAGTTTATTCAAGTGGGACCCAAGAGGGGCGGTGGCACCGCCGAACCGGCTGCTGGAAGCGGTAGCACCACCCCCACCAGGAGCAGCAGCACCAGCACCAGTGGCTGCGGCGTACGCAATCCGGCCGAGGGAGCTGGGAGGTCTGGAGGATTTGTTTCAAGAGTACGGTGTCAGATACTACACAGCGGCCAAGATAGCTGAGCTGGGGTTCACGGTGAGTACGCTTCTGGACATGAAGGACGAGGAGCTGGACGACATGATGAACAGCCTTTGTCAGATTTTCCGGTGGGACCTCCTCGTCGGTGAGAGATACGGTATTAAAGCCGCCGTTAGAGCCGAGAGGCGACGCCTGGATGAAGAAGAGTCACGCCGGCGCCACCTCCTCTCTGCCGACACAGCCAACGCTATCGACGCACTATCCCAAGAAGGACTGTCGGAGGAGCCAGTACAGCAAGAGAAGGAAGCAGGGGGAAGCGGGGGAGTGGGAACGTGGGAGGTGGTGGTGGCCGGAGAGAGGAAGAAGCAGCAGCGGAGAAAGAAGGGGAAGACCAGAATGGGGTCGGCGGATGATAACATGAACGAAGATGACAACGAAGGTGGGGATGAAGACGATGACAAGGGTAGCGGTGAGCGTGGAAGCGAGAGGCAGAGGGAGCATCCATTCATAGTGACGGAGCCAGGAGAGGTTGCTCGTGGTAAGAAGAATGGGCTAGATTACCTCTTCCATCTCTACGAGCAATGCCGTGATTTCTTGATCCAGGTTCAGAACATTGCCAAAGAGCGCGGTGAGAAGTGCCCTACTAAGGTGACGAACCAGGTGTTTAGATACGCAAAGAAGGCGGGAGCAAGCTACATCAACAAACCCAAGATGCGACACTACGTACATTGCTATGCTCTGCATTGTCTTGATGAGGAGGCTTCCAATGCCTTAAGGAGAGCTTTCAAGGAGAGAGGAGAGAACGTTGGGGCTTGGAGGCAGGCCTGTTACAAGCCTCTTGTCGCCCTTGCTGCTCGCCAAGGTTGGGACATCGATGCCATCTTCAATGCCCATCCCCGACTTGCTATCTGGTACGTACCCACCAGGCTTCGCCAACTCTGCCACTCCGAGCGCAGCAACGCAGCAGCAGCCGCAGCAGCAGCTGCATCTAGCTGTATCTCCGGTGGAGCTGATCACTTGCCATTCTGA 1209 0.5658 MDPDAFTASLFKWDPRGAVAPPNRLLEAVAPPPPGAAAPAPVAAAYAIRPRELGGLEDLFQEYGVRYYTAAKIAELGFTVSTLLDMKDEELDDMMNSLCQIFRWDLLVGERYGIKAAVRAERRRLDEEESRRRHLLSADTANAIDALSQEGLSEEPVQQEKEAGGSGGVGTWEVVVAGERKKQQRRKKGKTRMGSADDNMNEDDNEGGDEDDDKGSGERGSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKERGENVGAWRQACYKPLVALAARQGWDIDAIFNAHPRLAIWYVPTRLRQLCHSERSNAAAAAAAAASSCISGGADHLPF* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0013 402 Pfam Floricaula / Leafy protein SAM domain 52 129 IPR035079 -
Vvi17g0013 402 Gene3D Protein LEAFY 219 388 IPR038276 -
Vvi17g0013 402 MobiDBLite consensus disorder prediction 212 231 - -
Vvi17g0013 402 MobiDBLite consensus disorder prediction 149 231 - -
Vvi17g0013 402 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 216 382 IPR035209 GO:0003677
Vvi17g0013 402 PANTHER PROTEIN LEAFY 1 401 IPR002910 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0013 1 380 Orphan Transcription Factor Family AT5G61850 64.500 4.59e-163 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Vvi17g0013 C_LFY_FLO 2e-110 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0013 - - vvi:100252653 716.457