Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1355 ATGGTTTATGGTAGACTCGGATCCAAAGCGGCGTCGTTTCAACAAGACAATGCGGCTGCCTCTGCTCTTCAGCAGCAGAGGCGGAGGCGGAGATTGTGTATTGTGGCAGTGTTGTCTGTCGTTTTGATTGTGGCTGCTGTGGCGTCAACGGTGGCTTTGGTGGTTCGCCGGGAGGGATCTGCGGCTGGATCGGATGGGAGGGTTCGTAGGAAGCCGACTCAGGCGATCTCCCATACTTGCAGCAGAACTCGGTTCCCCACTCTGTGTGTTGATTCTCTGCTTGACTTCCCTGGCTCGCTCACCGCGGGCGAGCGCGACCTGGTCCACATTTCGATGAACATGACCTTACAGCGGTTCGGGAAGGCGCTGTACGTGTCGTCGGAGATCGCGAATCTGCAGATGGACACGCGCGTGAGAGCGGCCTACGAGGACTGCCTCGAGCTTCTGGAGGAGTCGGTGGAGCAGCTCTCGCGGTCACTGACCTCCGTCGCGGGAGGCGGCGATGGTCAGGCCGTCGGAAGCACGCAGGACGTGCTGACGTGGCTGAGCGCTGCGATGACGAACCAGGACACGTGTACCGAGGGTTTCGACGACGTGAGTGGATTCGTGAAGGATCAGATGGTGGAGAAGCTCCGGGACCTGTCGGACCTGGTGAGCAACTGTCTCGCGATATTCGCCGCCAGCGGCGGCGATAACGATTTCGCGGGAGTGCCGATACAGAACCGGAGGAGGAGGCTCATGCAGGACTCCGATATTTCGGCGAATCAGGATAGTACCGGATTTCCGAAATGGCTGACTCGGAGGGAGAGATCCTTACTGCAAATGCCGGTTCCGGCAATACAGGCCGATATTATCGTTTCGCAAGATGGAAACGGCACTTACAAGACGATTACGGAGGCGATTAAGAAGGCGCCTGAGTACAGTAGTCGCCGGACGATTATTTACGTGAAGGCGGGAAGGTACGAGGAGAATAATTTAAAGGTTGGGAGGAAGAAGACTAATTTGATGTTTATAGGTGACGGGAAGGGCAAAACTATAATTACCGGTGGGAAGAGCGTCTTCAACAATCTTACAACGTTCCACACCGCGTCCTTCGCTGCTACAGGAGCTGGTTTCATTGCCAGAGACATGACCTTTGAGAATTGGGCTGGGCCAGGTAAGCACCAGGCCGTGGCACTCCGGGTCGGGGCCGACCATGGTGTTGTCTACCGGTGCAACATTATTGGCTACCAGGACACCCTATACGTGCACTCGCAACGTCAATTCTTCCGAGAATGTGACATATACGGAACCGTAGACTTCATCTTTGGCAATGCGGCCGTAGTTTTCCAAAACTGCAGCCTATATGCCCGAAAGCCCATGGCCCAACAAAAGAACACAATCACAGCCCAAAACCGAAAAGACCCTAACCAAAACACCGGAATCTCAATCCATGCATGCCGGATTCTCCCCGCTGGCGACCTTGCACCAGTCAAGGGGAGCTTCCCAACGTACCTTGGGCGGCCGTGGAAGTTGTACTCGAGAACCGTGTACATGCTTTCGTACATGGGCGATCACATCCACCCTAAGGGTTGGCTAGAGTGGAATACCACATTTGCCTTGGACACACTTTACTACGGCGAGTACATGAATTATGGGCCGGGCGGGGCCGTGGGCCAGCGCGTGAACTGGCCCGGGTACCGGGTCATAACGTCGGTGGTGGAGGCGACGAAATTCACCGTCGGACAGTTCATTTACGGTTCGTCTTGGCTGCCGTCGACTGGCGTGGCCTTCTTGGCCGGCCTATCGGTTTGA 1794 0.5591 MVYGRLGSKAASFQQDNAAASALQQQRRRRRLCIVAVLSVVLIVAAVASTVALVVRREGSAAGSDGRVRRKPTQAISHTCSRTRFPTLCVDSLLDFPGSLTAGERDLVHISMNMTLQRFGKALYVSSEIANLQMDTRVRAAYEDCLELLEESVEQLSRSLTSVAGGGDGQAVGSTQDVLTWLSAAMTNQDTCTEGFDDVSGFVKDQMVEKLRDLSDLVSNCLAIFAASGGDNDFAGVPIQNRRRRLMQDSDISANQDSTGFPKWLTRRERSLLQMPVPAIQADIIVSQDGNGTYKTITEAIKKAPEYSSRRTIIYVKAGRYEENNLKVGRKKTNLMFIGDGKGKTIITGGKSVFNNLTTFHTASFAATGAGFIARDMTFENWAGPGKHQAVALRVGADHGVVYRCNIIGYQDTLYVHSQRQFFRECDIYGTVDFIFGNAAVVFQNCSLYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILPAGDLAPVKGSFPTYLGRPWKLYSRTVYMLSYMGDHIHPKGWLEWNTTFALDTLYYGEYMNYGPGGAVGQRVNWPGYRVITSVVEATKFTVGQFIYGSSWLPSTGVAFLAGLSV* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1355 597 Gene3D - 277 595 IPR012334 -
Vvi16g1355 597 ProSitePatterns Pectinesterase signature 2. 428 437 IPR033131 -
Vvi16g1355 597 FunFam Pectinesterase 277 595 - -
Vvi16g1355 597 FunFam Pectinesterase 72 228 - -
Vvi16g1355 597 SUPERFAMILY Pectin lyase-like 278 594 IPR011050 -
Vvi16g1355 597 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 74 225 IPR035513 -
Vvi16g1355 597 Pfam Plant invertase/pectin methylesterase inhibitor 75 224 IPR006501 GO:0004857
Vvi16g1355 597 Pfam Pectinesterase 283 580 IPR000070 GO:0030599|GO:0042545
Vvi16g1355 597 Coils Coil 139 159 - -
Vvi16g1355 597 CDD PMEI-like_3 80 227 - -
Vvi16g1355 597 Gene3D Invertase/pectin methylesterase inhibitor family protein 72 227 IPR035513 -
Vvi16g1355 597 PANTHER PECTINESTERASE 42 585 - -
Vvi16g1355 597 SMART PMEI_2 71 224 IPR006501 GO:0004857
Vvi16g1355 597 NCBIfam pectinesterase inhibitor domain 60 225 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1355 Vvi-Chr16 21976204 21979074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1355 1 597 Carbohydrate Esterase AT3G49220 64.169 0.0 802
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1355 - - vvi:100258861 1140.56