Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1350 ATGGACTTGGATAATATCGAGTGTGTATCGTCATCGGATGGCATGGAAGAGGAGGAGATCCACCACCTTCATCACCATCATCACAATCTCAATCACAATCATGTGGTTCATCAGTTCTCGTCGAAGCCTCTTCAAAACGGCGTCGTTCCTCCGGCGACTGCTCCGGCGACCAGCGTTCATGAATTGCTTGAGTGCCCCGTGTGCACCAATTCCATGTACCCACCAATCCACCAGTGCCACAACGGACACACCCTGTGCTCTACCTGTAAAACAAGGGTTCACAATAGGTGCCCTACTTGTAGACAGGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCTGAATCTCTTGAATTGCCTTGCAAGTATTACTCCTTGGGCTGCCCGGAGATATTTCCTTATTACAGCAAACTCAAGCATGAGGCAGTATGCAACTTCAGACCATACAATTGCCCATATGCTGGATCCGAGTGCTCTGTTGTTGGGGACATTCCTTTCTTAGTTTCCCATCTCAGGGATGATCACAAGGTGGACATGCACACTGGATGTACATTTAACCATCGATATGTAAAATCCAATCCCCGTGAAGTAGAAAATGCTACCTGGATGCTAACAGTCTTCCATTGTTTTGGTCAATATTTTTGCCTTCACTTCGAAGCCTTTCAACTCGGCATGTCCCCTGTATATATGGCATTCCTTCGTTTCATGGGTGATGAGAATGAAGCACGGAACTATGGTTACAGCCTGGAGGTTGGTGCAAATGGAAGGAAACTCATATGGGAGGGTACTCCAAGGAGCATCCGGGATAGCCATAGAAAGGTCAGGGACAGCCATGATGGTCTCATTATCCAAAGAAACATGGCACTTTTCTTCTCCGGTGGGGACAGAAAGGAGCTGAAGCTGAGAGTTACAGGAAGGATATGGAAGGAACAGCAGAATCAAGATGCTGGTGTGTGCATACCCAACCTCTGTAGCTAA 984 0.4746 MDLDNIECVSSSDGMEEEEIHHLHHHHHNLNHNHVVHQFSSKPLQNGVVPPATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEAVCNFRPYNCPYAGSECSVVGDIPFLVSHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMSPVYMAFLRFMGDENEARNYGYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNQDAGVCIPNLCS* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1350 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 117 IPR013083 -
Vvi16g1350 327 FunFam E3 ubiquitin-protein ligase SINAT3 117 173 - -
Vvi16g1350 327 SUPERFAMILY TRAF domain-like 118 310 - -
Vvi16g1350 327 ProSiteProfiles Zinc finger SIAH-type profile. 118 178 IPR013010 GO:0008270
Vvi16g1350 327 SUPERFAMILY RING/U-box 51 105 - -
Vvi16g1350 327 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 46 312 - -
Vvi16g1350 327 ProSiteProfiles Zinc finger RING-type profile. 65 101 IPR001841 -
Vvi16g1350 327 Pfam Seven in absentia protein family 107 306 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vvi16g1350 327 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 172 306 IPR008974 GO:0005515
Vvi16g1350 327 CDD Sina 179 307 - -
Vvi16g1350 327 FunFam E3 ubiquitin-protein ligase SINAT5-like 174 306 - -
Vvi16g1350 327 FunFam E3 ubiquitin-protein ligase SINAT3 11 116 - -
Vvi16g1350 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 171 IPR013083 -
Vvi16g1350 327 CDD RING-HC_SIAHs 63 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1350 Vvi-Chr16 21934684 21938154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1350 38 313 C3H Transcription Factor Family AT2G41980 76.534 4.55e-162 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1350 K04506 - vvi:100252009 672.544