Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1348 ATGGAGGATGAGAGATGCAGGAGGAGAGGTAGTCCCAACTGGAGGTGCAGTGAAAGGGCTTTGCCTGGAAAAACACTTTGTGAGAAGCACTTGTTCTGCCAGCTGATTCGGAATCGGGTGAAGACGGCGAGGCTTGCGGAGGGGAGAGACGGGGAGGTGGGTCGCCCAAGTGGGAAGCAGAAGCTGGCGGCAGCTGGGGAGGAGATGGTTGGTGGTGGCGGTAAAGAGGATCGGGGGTTTTCGGGTGAAATCCTGGCCGCCGGCGAGGGAGGAGGCGGTGAGGTGGTGGGTGGGGGGGAGATGCCTGAGGGGTTTGGAGGAGGAATGTGGGGGTGGTTTGGGGGAGATGAGGGTGGAAATGACGGTAATGCCCTTGGCAGCGGTGGAGTTATGGGCGGCTCTGCTGGAGACGGCAATGGTAGGGAAGTGGATGGTGGAGGGGTCGGTGAGCGCGGCGTCGCGAGTGGAAATTGGGCTACTGGCCGTGGGAATGGCGGTGGAGTAGTTGAGAGCGGCGGAGACGGTGATTGGGTCTCTAGTGGTGGAATTGGGGGCTGCTCCAGGGAAGAAGCCGGTGGAAATGGCAGCGGCGATGTTCGGTTAATTGAAAGCCTTGCGGGCCATTCCGGTGGAAATGAAGGCGGCGGCGAGGAAGTCGTTAAGGGAGGCGAGGACTCTGGTCGGGCTGCCGGCGGTGGAGGACTTGTGGGCTACCCCAAGGAAGTCACTGGTGGAATTGGCGGCAATTCCGGTGGAAGTGGCGGTGGAATTGGAGGAATTGAGAGTAGGTCCGACGGTAATGGCCACGGGGATGATGTTGGGGAGAAGAAGAAAAGGCGAGGCCGGCCAAGAGGTTCAAAAACCAGAAGGAAAGGTGAAGAAGTTCCGGGTCAGTCTAGGGAGAGCACTGGCGGGAATGGTGGTGGAAATGATGGGAATGGGTGCAATGCCAGTGGAAATATCGGTGGAGATGAGATTGTTGTGTTGAAAAAGCGAAAGCTAGGCCGGCCCAAGGGTTCAAAAACTAGGAGGAACGTTATCGATGGTGAGATAGTTGAGCTCCCAATCGGTAATTGGGGTGGAAGTGAAGTAATTGGTGGCCTATCCAGTGGGAATGGCAGGGGTGAAATTGAAGGAACTGGAGACCTATCTGGTGGGAGTGGCAGGGGTAGTGGTGAAGGGATCGGAGGCCTGCCTGGTGGGGATGGCAGTGGAGGAGAGATTATGGTGAAGAGGCGAAAGCTAGGCCGACCTAAAGGTTCAAATACTAGGAGGAGGATTCCTGATGGTAGAGAACTCCAGGTATGGGCAGGTGAAACAGTTGAAAATGATGGTCTGGCTCTTGATTTGGAAGGAAACCGATGGAAGTCTGGTGCATTCCATGGTGGAAACAATGGGGAAGGATGGAAGGTTAAGCATGGGCGTGGCCGACCAAAAGGGTGGAAGAAGAAGGGTAGGAAGAGGAAGGTTTTTTATGGTGGAGAACTTCGGGCTTTGGAAGGTGTGAAGAAGAGGGGAAGGAAGAGGAAGATTGTTGATGGTGAAGAGCTTTGGGATTTGAAAGGGTTGGAAAAGAGGGGGAGGAAAGGGGGCATTTTTTATGGGAAAGAACTCCAGGGCAGTTCCTGTGAGGCCAGAATGGTGGATTTACTTGCCACATTGCAAAGTTTTGCTCCTTATAGTGGAGCCGTTTTGGCTGAATACATTAAGAAACAATATGCAGCAATTACTAGTGTTCCCTCTAAGCAGAAAGTTTGGCGGCAGCCTGATTTGGCCAAAATGGTGGGCCTCCTTGCTACTTTAAGGGATGTTGTGCCTTATAGGGGAGAAGTCCTGGCCGAAAATTTTCTGTACTTCAAATGGCGTAGTTCAATTTCTGCATTAGAGTACCTGGCTCCTTGTAGAGGAGGTGTTCTGGCTGAATATTTCATGTATCGTGAACGATCCAGTTCAATTCCTTATGATGACATCTACAAATGCGAATTTGATGAGGCCCCACTTGTGACTGAAGAGATTCAGGATCAGTCTGTTCAAGGTATTAGAGTAAATGAAGGTCCCAGTCACAGTGAAGGCATTGGAGTAGGTGAAGGTCCAAGTTCCACTGAAGGAATTCAGGGGCAGTATGGTGGAGCTGCTGGCGGAAATGATGGTGGGAAGCTTGGTGCTAAAGAATTTTTGGGAGGGTTTGGTGCATTTGCAAGGCAAAAGGATGGTGGATATGGATTTAGTAGGCTAAAGAACAAATGCCGCAGACTAAAAGGTTCAAATAATGGTGAAGAGATTGGGGGCTGGTCTGGTGAAGCCAGTAGGGAAAATGGTCCTCAGAAAGAAATTCAGGGCTGGTCAAGTGAAGCTTGCTGTCGAAATGATGGAGACGAGATGGTCAGTCTGAGAGGTAGGTGTGACAGGCCAAACAGTTCGGAGGATTGGATGAACGAGCTTAACAGGAGTGGTGGAGCAACCTGCACTATTGATAGGAGAAGCGAGATCATTTCTTCAGAGGGTAAGTGTGGCTGGCCGCAGGTTATAGAGAACAAAAGGACCATTCTTGCTGCTGAACAAGATGGGATCATTCCTTTTGAAGTCACTGGCTGGAATGATATGGGGGATGAGACTGAAGGTTTGGAGAATAAGAAGAGTGGTCTCATAGCTATAGAAGATCGTGGTTTGCCTGGTGAAGTTATTGGTCGTGATGAGAAGCCAAATGAGATTTTTCGGCAGAAGGCTAAGCGTGGCCGGCCAAAGGGTTCAAAGAACAGGATTCCATGTATCCCTAAAGAAGAACAAAGCCAGGCCACTGCCAGTAATTTTTTGGGTGGAAATAACAGCGGAGATGTGAATATTTCTTGGAAACGTAAGCCTGGCCGGCCAAAGGGTTCAAAGAACAAGAAGGTAATCCTTAATGGTGAAGCCCTGAACAAGATTCCAATGCTGAATCAGGAACATCAGATGCCTGTTTCAAAGATAGAAGAAGATCTTAACAAAGAAGGCAGTTTACAGGTTGAGTATGTGAGGGACTGTGGCAATGCACAGATGAGTAATGGTGAGTTATTAACTGATACCGGCAATGTTCATAAGAGGCCCAGAGGAAGGCCGAAGAAGTTGAAGGACCATCGGGGGGAATCTAACTGCATTAAAGAGGGAAAATTCAATGAGAATGGATTGGCGAATTCAGGATTATCAGATGCTAGCAATGGGAAAAGAGAGCAGAGGAGTTTAATGTGTCATCAATGCTTGAGGCATGCCAAGAGTGGTGTTGTCGTTTGTTCCAGTTGCAAAAAGAAACGCTATTGCTATGAGTGCCTTGCGAAATGGTACCCGGAGAAAACAAGAGAGGACATAAGGAATGCATGTCCATTCTGCCGTTGCATTTGCAATTGCAGAATGTGTCTCAAACAGGATTTAGTCGTAATGACTGGTCATGGAGAAGCAGATACAAATATCAAATTGCAAAAGTTGCTTTACTTGCTAGACAGAACTCTGCCTCTCCTCAGACATATTCACGGGGAGCAGAGCTCTGAGATACATGTGGAAGCCCAAATACGAGGTGCTCAATTGACAGAAGAGGATATAATGAGGTCAATACTTGACAAAGATGACCGAGTGTATTGTGACAATTGCAATACATCCATTGTCAATTTACACAGAAGCTGCCCCAATCCTGATTGTTCTTATGATCTGTGTCTCACTTGTTGCCGGGAACTAAGAAAAGGTTTGCAGCCTGGTGGCAATGAAGCAGAATCTTCTCATCAACAATTTGTTGAACGAGTGAATGGTCAAGGTACAGAAGTGAAGGGCAGAATTCCTGCACATGATGAGAGGTATGGTTGGGAGAGTGACGGGGCCCACCCCACAAATAATTATGCAGCTGATACCTGTGACTTTCCTGATTGGAGAGTGAATATGGATGGCAGCATCCCTTGCCCTCCAAAAGCACGTGGAGGTTGTGGTACTGAGACACTTGAACTAAGACGTATCTTTGAACCTAATTGGGTAGACCACCTGATCAAGAGTGCAGAGGACCTTACAATGAATTTTGGATCACCAGACATTGATTTTTCTCAGGGATGTTCATTGTGCCTTCCTACTGCTTCCACAGGAAGTGGAGAAAAGCATTGTGAAGTAAGGCGGGCAGCTTTTAGGGAGAACAGTCATGACGACTTTCTCTACTGTCCAAATTCTGCTTGCTTGGGAGACAACGAAATTGAGCATTTTCAAATGCATTGGATGAGAGGTGAACCTGTCATAGTTAGAAATGTACTTGAGAAGACATCTGGTCTTAGTTGGGACCCAATGGTCATGTGGAGGGCTTTTAGAGGTGCAACAAAAGTACTAAAAGAAGATGCTTTGAGTGTTAAGGCCATTGATTGCTTCGATTGGTGTGAGGTTCAGATTAATATTTTCCAGTTTTTTAAGGGCTACTTACAAGGTCGAAGACATAAGAGTGGGTGGCCAGAGATGTTGAAGCTGAAGGACTGGCCTCCATCAAATTCGTTTGATGAGTGTTTGCCTAGGCATGGTGCTGAATTTATTGCTATGCTCCCTTATAGTGATTACACGAACCCAAAATCTGGTTTATTGAATCTCGCTACAAAGCTTCCTGATGTTTTGAAGCCAGACCTGGGACCAAAAACATACATCGCTTATGGGTCTTTGGAAGAACTTGGTAGAGGCAATTCGGTGACAAAGCTGCATTGCGACATTTCAGATGCGGTAAACGTATTAACACACACAGCCAAAGTGAATATTACCCCATTGCAAAGCAAAATCATGAACAAATTGCAGAAGAAATATGAAGCTGAGGATTTGCTGGAGCTCTATGGTGGGGCACATGATGCATCGGACACAACTGGGAAAGAAACAACAGAACAATCTCAGAAAGATGAAACCATGGATTGTGTATATTCTGCAAAAGAGAACACTGTTGGGATTGACTCTTTGTTTCTAGGAAGCCTAAATGAGAAAGAAGAGAAACACAGTGAGCAAGAAGATAGGAGGACCTTGCCCTTATTAGATTCCATGGGTTTAGGAACTATGAGTTCAGATAGAGATTACATTCTGGAGGATCTTGCCCTTGAAAGTACAGTGATGGTGAATTGTGAAAAGCAATCTGTTGGAGATTTGAATACAGAGTTTCAGATTTGTGACCTTGAAAAGCATGAATCCAACTTGTCATTGCTAGAAAAAGATTGTGGGATCACACATGTATTGGTTAAGAAACAGGCCGAGTTGAAAAGATGTTCACTACAGTTTGGTGGCTCTGTTGAAGATAGCTTGTTACATGAAAGTATTAATCTAGAAAAAACCCCACCAAATGGTCATAAAATTGGGAATTTTTTGGGTATGAGTGGTAAAGAAGACAGATATTACTCCATGAACAATCAACCTGATACATGCACCAGCTATATTGACGGGAGTTCATCCATTGTGCGAAACTGCATGAATGGGGAGCTAAACATACAGGGAATTGAACAACCGGGATTCAAAGAATTTTCCTCTTTCATATGCAGGGATGTTGATGAGAGGAATTTCTCTTTATCTGGTGAGATAAATGTAGATGCCGACTGTCTTGCTACCAAAGACTTGTGTTGTCCTCATCAGCTTGGTGCTGAAAATGGAATAGCTAAAACAGATTCATTTAATCAAGAATATTCTCAACCTCCTAATGTAGCGTTGAAAAACAATCTTAACAATGAAGATGTTCTAGATGTGATTTTCTTAGGCACCGAACGAGATTATGAACCAGAGTTGATGAAGTCAGACCTAGATGAGAAGGGCACAAGGTTCAACTATGCAGTCAACTGCAGGGATGTTACTGAGAGAAATTTCTCCTTGCCAGACCGAATGGATTTCAACCCCCACTGTCTTGACACTGAAGAGTTATGTTGTGCTGATCGACTTGATGTTCAGGATGAAATAGTCGAGAGAGACTCAGCACACAAGCAAGAATACAACCAGCCACCTAATTTGTTAGGTACAAGGATGCTTATAAGTGGGAAAGATGGTTTGCAGGGAATGTTTTCAGGCAATTGCTGGGAGAGTGGTCCAAAGCCAGATACAAGAGTGCTAGATGTGGGCCCTGACTGCTTTGCCAAAAGCAGGGATGTTTCTGAAAAGGATCTATTCTTACCAGAGGAGAGGGATAGAGATCCAAATTGTCCTGCTGCTGAAGAGTTTTGGTCTGGTAATGGATTTGATGCCAAAAATGCAAGAACTGAGAGAGGTCTGTGCAATCAAGAATATTTTCATCTTTCTAATGAAAAAGCAGAGATGAGGTTTGTCAGTGAAAAGAGTCCTTTGGAAGCAACCTTTTCAGGAAACGAAGCAAATCATTCAGAATCAATGAAGCCTGGTTCTTCCAATGTTAGAGATTCCGTTCAAAGCAATGACCATTCAGAGGTTGCATATGGAGGTGCTGTTTGGGACATTTTTCGTAGGCAGGATGTACCCAAGTTAATTGAATTCTTGCGGAAGCATCAGAAAGAATTTCGCCATATCAATAATCTTCCTGTGGATTCGGTTATTCATCCCATTCATGACCAGACCCTTTATCTGACTGAGAGGCATAAGAAGCAACTGAAGGAGGAGTACAATGTTGAACCTTGGACATTTGAGCAATACCTTGGTGAGGCTGTGTTCATTCCTGCAGGATGCCCACACCAAGTGAGAAATAGACAGTCATGCATCAAAGTGGCCCTCGACTTTGTATCCCCCGACAATGTTCAAGAATGCATCCGGTTGACTGAGGAGTTCCGCCTGCTTCCAAAAGACCATAGGGCTAAGGAAGATAAATTGGAGGTAAAGAAGATGGCATTATACGCTGTAAATGTTGCTGTAGATGAAGCGAAAAATCTGATCTCAAAGCTTGATTCAACAAATGTAGGCAAGGAAGACCAGCACCAGAACCAGGACCAGGACCAAGACCAGAACCAGAACCAGAACCAGAACCAGCTGCTGTAA 6960 0.4603 MEDERCRRRGSPNWRCSERALPGKTLCEKHLFCQLIRNRVKTARLAEGRDGEVGRPSGKQKLAAAGEEMVGGGGKEDRGFSGEILAAGEGGGGEVVGGGEMPEGFGGGMWGWFGGDEGGNDGNALGSGGVMGGSAGDGNGREVDGGGVGERGVASGNWATGRGNGGGVVESGGDGDWVSSGGIGGCSREEAGGNGSGDVRLIESLAGHSGGNEGGGEEVVKGGEDSGRAAGGGGLVGYPKEVTGGIGGNSGGSGGGIGGIESRSDGNGHGDDVGEKKKRRGRPRGSKTRRKGEEVPGQSRESTGGNGGGNDGNGCNASGNIGGDEIVVLKKRKLGRPKGSKTRRNVIDGEIVELPIGNWGGSEVIGGLSSGNGRGEIEGTGDLSGGSGRGSGEGIGGLPGGDGSGGEIMVKRRKLGRPKGSNTRRRIPDGRELQVWAGETVENDGLALDLEGNRWKSGAFHGGNNGEGWKVKHGRGRPKGWKKKGRKRKVFYGGELRALEGVKKRGRKRKIVDGEELWDLKGLEKRGRKGGIFYGKELQGSSCEARMVDLLATLQSFAPYSGAVLAEYIKKQYAAITSVPSKQKVWRQPDLAKMVGLLATLRDVVPYRGEVLAENFLYFKWRSSISALEYLAPCRGGVLAEYFMYRERSSSIPYDDIYKCEFDEAPLVTEEIQDQSVQGIRVNEGPSHSEGIGVGEGPSSTEGIQGQYGGAAGGNDGGKLGAKEFLGGFGAFARQKDGGYGFSRLKNKCRRLKGSNNGEEIGGWSGEASRENGPQKEIQGWSSEACCRNDGDEMVSLRGRCDRPNSSEDWMNELNRSGGATCTIDRRSEIISSEGKCGWPQVIENKRTILAAEQDGIIPFEVTGWNDMGDETEGLENKKSGLIAIEDRGLPGEVIGRDEKPNEIFRQKAKRGRPKGSKNRIPCIPKEEQSQATASNFLGGNNSGDVNISWKRKPGRPKGSKNKKVILNGEALNKIPMLNQEHQMPVSKIEEDLNKEGSLQVEYVRDCGNAQMSNGELLTDTGNVHKRPRGRPKKLKDHRGESNCIKEGKFNENGLANSGLSDASNGKREQRSLMCHQCLRHAKSGVVVCSSCKKKRYCYECLAKWYPEKTREDIRNACPFCRCICNCRMCLKQDLVVMTGHGEADTNIKLQKLLYLLDRTLPLLRHIHGEQSSEIHVEAQIRGAQLTEEDIMRSILDKDDRVYCDNCNTSIVNLHRSCPNPDCSYDLCLTCCRELRKGLQPGGNEAESSHQQFVERVNGQGTEVKGRIPAHDERYGWESDGAHPTNNYAADTCDFPDWRVNMDGSIPCPPKARGGCGTETLELRRIFEPNWVDHLIKSAEDLTMNFGSPDIDFSQGCSLCLPTASTGSGEKHCEVRRAAFRENSHDDFLYCPNSACLGDNEIEHFQMHWMRGEPVIVRNVLEKTSGLSWDPMVMWRAFRGATKVLKEDALSVKAIDCFDWCEVQINIFQFFKGYLQGRRHKSGWPEMLKLKDWPPSNSFDECLPRHGAEFIAMLPYSDYTNPKSGLLNLATKLPDVLKPDLGPKTYIAYGSLEELGRGNSVTKLHCDISDAVNVLTHTAKVNITPLQSKIMNKLQKKYEAEDLLELYGGAHDASDTTGKETTEQSQKDETMDCVYSAKENTVGIDSLFLGSLNEKEEKHSEQEDRRTLPLLDSMGLGTMSSDRDYILEDLALESTVMVNCEKQSVGDLNTEFQICDLEKHESNLSLLEKDCGITHVLVKKQAELKRCSLQFGGSVEDSLLHESINLEKTPPNGHKIGNFLGMSGKEDRYYSMNNQPDTCTSYIDGSSSIVRNCMNGELNIQGIEQPGFKEFSSFICRDVDERNFSLSGEINVDADCLATKDLCCPHQLGAENGIAKTDSFNQEYSQPPNVALKNNLNNEDVLDVIFLGTERDYEPELMKSDLDEKGTRFNYAVNCRDVTERNFSLPDRMDFNPHCLDTEELCCADRLDVQDEIVERDSAHKQEYNQPPNLLGTRMLISGKDGLQGMFSGNCWESGPKPDTRVLDVGPDCFAKSRDVSEKDLFLPEERDRDPNCPAAEEFWSGNGFDAKNARTERGLCNQEYFHLSNEKAEMRFVSEKSPLEATFSGNEANHSESMKPGSSNVRDSVQSNDHSEVAYGGAVWDIFRRQDVPKLIEFLRKHQKEFRHINNLPVDSVIHPIHDQTLYLTERHKKQLKEEYNVEPWTFEQYLGEAVFIPAGCPHQVRNRQSCIKVALDFVSPDNVQECIRLTEEFRLLPKDHRAKEDKLEVKKMALYAVNVAVDEAKNLISKLDSTNVGKEDQHQNQDQDQDQNQNQNQNQLL* 2320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1348 2319 FunFam Transcription factor jumonji (JmjC) domain-containing protein 1388 1642 - -
Vvi16g1348 2319 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 1070 1141 IPR018866 -
Vvi16g1348 2319 SMART AT_hook_2 502 514 IPR017956 GO:0003677
Vvi16g1348 2319 SMART AT_hook_2 331 343 IPR017956 GO:0003677
Vvi16g1348 2319 SMART AT_hook_2 412 424 IPR017956 GO:0003677
Vvi16g1348 2319 SMART AT_hook_2 472 484 IPR017956 GO:0003677
Vvi16g1348 2319 SMART AT_hook_2 277 289 IPR017956 GO:0003677
Vvi16g1348 2319 SMART AT_hook_2 908 920 IPR017956 GO:0003677
Vvi16g1348 2319 SMART AT_hook_2 1026 1038 IPR017956 GO:0003677
Vvi16g1348 2319 SMART AT_hook_2 951 963 IPR017956 GO:0003677
Vvi16g1348 2319 MobiDBLite consensus disorder prediction 369 430 - -
Vvi16g1348 2319 MobiDBLite consensus disorder prediction 299 317 - -
Vvi16g1348 2319 MobiDBLite consensus disorder prediction 265 279 - -
Vvi16g1348 2319 MobiDBLite consensus disorder prediction 2104 2129 - -
Vvi16g1348 2319 Pfam JmjC domain, hydroxylase 2131 2235 IPR003347 -
Vvi16g1348 2319 MobiDBLite consensus disorder prediction 1014 1039 - -
Vvi16g1348 2319 Gene3D Cupin 1393 1661 - -
Vvi16g1348 2319 Gene3D Cupin 2093 2261 - -
Vvi16g1348 2319 ProSiteProfiles Zinc finger RING-type profile. 1075 1122 IPR001841 -
Vvi16g1348 2319 SUPERFAMILY Clavaminate synthase-like 1402 1575 - -
Vvi16g1348 2319 MobiDBLite consensus disorder prediction 2294 2319 - -
Vvi16g1348 2319 MobiDBLite consensus disorder prediction 154 322 - -
Vvi16g1348 2319 ProSiteProfiles WRC domain profile. 1 44 IPR014977 -
Vvi16g1348 2319 SMART cupin_9 1503 2252 IPR003347 -
Vvi16g1348 2319 MobiDBLite consensus disorder prediction 756 779 - -
Vvi16g1348 2319 ProSiteProfiles JmjC domain profile. 1522 2252 IPR003347 -
Vvi16g1348 2319 MobiDBLite consensus disorder prediction 1610 1629 - -
Vvi16g1348 2319 MobiDBLite consensus disorder prediction 934 948 - -
Vvi16g1348 2319 Pfam WRC 2 31 IPR014977 -
Vvi16g1348 2319 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 932 2287 IPR045109 GO:0032454|GO:0033169
Vvi16g1348 2319 MobiDBLite consensus disorder prediction 2305 2319 - -
Vvi16g1348 2319 SUPERFAMILY Clavaminate synthase-like 2136 2282 - -
Vvi16g1348 2319 MobiDBLite consensus disorder prediction 934 962 - -
Vvi16g1348 2319 MobiDBLite consensus disorder prediction 682 712 - -
Vvi16g1348 2319 FunFam Transcription factor jumonji (JmjC) domain-containing protein 2077 2261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1348 Vvi-Chr16 21915775 21927386 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vvi16g1348 JmjC 6.5e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1348 K15601 - vvi:100247074 4347.73