Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1343 ATGGGGAAGAAGGGTGGCGGGTGGTTATCGTCGGTGAAGAAAGTGTTCAAATCTCCGTCCAAGGAGTCGCCGGAGAAGAAGAAGGCTGATGTGGAGAAGTGCCACAATGAGGCACCGGAGGTTGTGTCATTCGAGCACTTTCCGGCGGAGAGTTCGCCGGATGTTACTAATGATGACAGTGATAGGGAGGAGGAGGGGTCGTCTCCGGTGACTGGGGATAGGAGCCATGCTATTGCTGTTGCTGTGGCAACTGCTGCAGCGGCCGAAGCGGCTGTTGCAGCTGCGCAGGCTGCTGCAAAGGTTGTTAGGTTGGCCGGGTATGGCCGCCACTCCAAGGAAGATAGGGCTGCCACCATCATACAGTCTTATTACAGGGGATATCTGGCTCGTCGGGCCTTGCGTGCTTTGAAGGGACTGGTGAGGCTGCAAGCGTTGGTGAGGGGCCATAATGTGCGTAAGCAAGCGCAAATGACCATGCGGTGTATGCAAGCATTGGTGCGTGTGCAGGCAAGGGTGCGGGCGCGGAGGCTTCAACTAGCCCATGAGAAGGTTCAGCAGAGGGTGGAGGACGAAGGGGAGAGAACACATGAGGAAGAACAGCCAAAGACAAAGATCCCAGTCAAGAAACTTGAGGCCGAAGGTTGGAATGGCAAGCACCAAAGGTCGGAGAAGATGAAAGAAAATCAGACGAGAAAACATGATGCTGTGATGAAAAGGGAGAGAGCCCTTGCCTATGCTTTTAGCTACCAGCAACAAGAATCAATCCCGAGTCGAAACGATGGTGGGTTGAATGACAATGAGCGGGAGAAGTCCCAATGGGGGTGGAATTGGCTCGAGCGTTGGATGGCTTCACAGCCCTACCACTTTCGCCAATCCAGTCCTCATGACCCCTCTTACATGACCCTCCCCACCACCGATAACATGTCGGAGAAGACAGTAGAAATGGACGTCATCAGCCCTCCAGGGCTCGACAATATCTACACAGGCCAACATGGACAACATGTTGTCGGAGACTCATTTCGCACACCCACTGACCCGACCCGACAACTTAAGCAGCCAAGCTCAGACAATGTCCCTAGCTACATGGCCCCAACCAAATCCACAAGGGCCAAATTTCGCGCCCAAGGCCCAACGAAGCCCCGCCCTGCTCCGCAGATGCCCCAGTGGAACCCCTCAACAAAGAAAGCACCATTCCTCGGGTCAGGTTGTGACTCCTCAAGCTCGGGTGGAGGGACTGCGACCACAACATACCCAACACCGAGAAGCCCAAGCCCAAAGGCTAATGGACCGAGGGCGCCGGCAAGGCGGGTTGGCAGGTTCAACCCGGACTCAAATGGGGCAGAGGAATGGATGGTCCATGTGGGAGGTTGGAGACATGATTTCGGATGA 1389 0.5522 MGKKGGGWLSSVKKVFKSPSKESPEKKKADVEKCHNEAPEVVSFEHFPAESSPDVTNDDSDREEEGSSPVTGDRSHAIAVAVATAAAAEAAVAAAQAAAKVVRLAGYGRHSKEDRAATIIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLAHEKVQQRVEDEGERTHEEEQPKTKIPVKKLEAEGWNGKHQRSEKMKENQTRKHDAVMKRERALAYAFSYQQQESIPSRNDGGLNDNEREKSQWGWNWLERWMASQPYHFRQSSPHDPSYMTLPTTDNMSEKTVEMDVISPPGLDNIYTGQHGQHVVGDSFRTPTDPTRQLKQPSSDNVPSYMAPTKSTRAKFRAQGPTKPRPAPQMPQWNPSTKKAPFLGSGCDSSSSGGGTATTTYPTPRSPSPKANGPRAPARRVGRFNPDSNGAEEWMVHVGGWRHDFG* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1343 462 MobiDBLite consensus disorder prediction 388 422 - -
Vvi16g1343 462 MobiDBLite consensus disorder prediction 18 40 - -
Vvi16g1343 462 MobiDBLite consensus disorder prediction 339 364 - -
Vvi16g1343 462 SMART iq_5 112 134 IPR000048 GO:0005515
Vvi16g1343 462 SMART iq_5 135 156 IPR000048 GO:0005515
Vvi16g1343 462 PANTHER IQ-DOMAIN 5-RELATED 1 405 - -
Vvi16g1343 462 ProSiteProfiles IQ motif profile. 113 141 IPR000048 GO:0005515
Vvi16g1343 462 Gene3D - 110 164 - -
Vvi16g1343 462 ProSiteProfiles IQ motif profile. 137 164 IPR000048 GO:0005515
Vvi16g1343 462 MobiDBLite consensus disorder prediction 339 447 - -
Vvi16g1343 462 MobiDBLite consensus disorder prediction 1 73 - -
Vvi16g1343 462 Pfam IQ calmodulin-binding motif 115 134 IPR000048 GO:0005515
Vvi16g1343 462 Pfam IQ calmodulin-binding motif 140 155 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1343 Vvi-Chr16 21853594 21856515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1343 1 460 IQD Protein Family AT3G49260 49.797 1.85e-108 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1343 - - vvi:100245291 824.313