Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1337 ATGGCTTCTACGACAAAATGCAGAGTTTTATGTACTCGTGTACTACAAATCTTTTGCAGGGCTTTTGAATTTCCACAACAAAATGGCTTGGTGTATCCCATGGACAGAGTTTTTGAGTATGACCCAAGCTTGTTTTCATACCAAACAAACTACAATCTTCCCAACTTCGTAGACTTGAGAGAGTTGGAGGATCATTTTCTTTTTCTGGACCAGAATCTTCCTTCTTGCAATGGTGTCTCAATCCATGATCACCCAGATGATTTTGATCATTATCTTGAAGTTGGTAGTGAAGAACACTTGACACAACTCCCCTCCGGAAATGACTCTGAGGATCGTCTGAAGATTGGAGGTGGATTCAGCGACCTGCAGAGTGTAATTCATGGCGGTTTTTCGGGTTCTTGGAAGCATGAAGAGGGCACACAACAAAGCTCAAGGTCGAAGACGGCTGCATTGGAGATGGACGATATAAAGCAGTATTTCAACGTGCCCATAACCAGAGCTGCCAAGGAGCTGAAGGTGGGATTGACAGTATTAAAAAAGAGATGCCGAGAGCTCAATATCACTAGGTGGCCTCATAGGAAGATCAAAAGCTTGAAAGCTCTGATTACCAATGCCAAGGTACTTAACAAAACCCGGGAACTGGGGTTGACAGAGGAGATAGAGATGCTGGAGGAGCATAGAAGGATGTTGGAGAAGCAGCCGGAGATGGAACTAACAGAGAAAGCTAAGAAGCTGAGGCAGGCATGTTTCAAGGCCAATTACAAGAGGAAAAGAGCTCTGCAGGCTCCATTTACTCAGATTTCATATGAATAA 813 0.4391 MASTTKCRVLCTRVLQIFCRAFEFPQQNGLVYPMDRVFEYDPSLFSYQTNYNLPNFVDLRELEDHFLFLDQNLPSCNGVSIHDHPDDFDHYLEVGSEEHLTQLPSGNDSEDRLKIGGGFSDLQSVIHGGFSGSWKHEEGTQQSSRSKTAALEMDDIKQYFNVPITRAAKELKVGLTVLKKRCRELNITRWPHRKIKSLKALITNAKVLNKTRELGLTEEIEMLEEHRRMLEKQPEMELTEKAKKLRQACFKANYKRKRALQAPFTQISYE* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1337 270 PANTHER PROTEIN RKD4 124 263 IPR044607 GO:0003700
Vvi16g1337 270 Coils Coil 213 233 - -
Vvi16g1337 270 ProSiteProfiles RWP-RK domain profile. 136 219 IPR003035 -
Vvi16g1337 270 Pfam RWP-RK domain 151 198 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1337 Vvi-Chr16 21822211 21823097 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1337 151 260 AtRKD Transcription Factor Family AT5G53040 61.818 4.18e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vvi16g1337 RWP-RK 4.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1337 - - vvi:100265885 496.508