Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1329 ATGTTTGAAAACTCTTTTTTAAAAACAGTTTTTTGTTCTTTAGAAAAAAAAAAAACATATTTTGTGATCAAAACACGATTTTTCACCCAATTCGATTCCGGAATCCGGATTGGATCCAGCAACCCAAACACACGCAAAGCTCCCCAACAATCAGGTGCCAAGACACATTTTCTAGGGAAACAAGTAGACCCTTTTGGAGACCCAACGGAGTCGACTGACAACCCCAGGTGGGCCAACGTGAAATCTAGACCGTTTAAAACGGTTAGAGGCCGAGCTTCACTCTCTTATCCTCTCTACGCTAACCATACTTATCCCACCTGTTTCAGCCTCTCAACTCCTCCTCCTTCACCTTTGCAAATGGCTTTGCTGAGCCAGCAGTTGCAGAGATTCTTTCTCACGACACTCAACTGTACATCCAACTTGAAGGCCACCAAGAAGAACAACAGTGTTGCCCTCAAGGAGAGGGCAAGATGCTGCTCAGCCATAGCCATTGATGCCCCTTCTTTTTCGGGTGTGGCGGGAATCAGGTGGGGTTTGTGCCGCCTCCAAGGGCCCAGAGAGGAGATGGAGGACGAGGCTGTTGTTCGGTCTGATGGCCTTGATGGGTTCTCCTTTGCCGCGGTTTTTGACGGTCATGCCGGCTTTTCTTCTGTCAAGTTCCTCAGGGATGAATTGTACAAAGACTGTGTTGCAGCTCTGCAAGGCGGGTTGCTCCTGAGTGGGAAAAATTTCAACATAATTCGAGAGGCTTTGGAGAAGGCTTTTGAAAGTGCTGATGCAAAATTATTGAATTGGCTTGAGACGACTGGGGAGGATGTCGAGTCTGGTTCAACAGCCACTGTGTTGTTGATTGGAGACGATATGGTGTTCATCTCACATGTTGGTGACTCATGTGTGGTTCTCTCTCGCTCTGGAAAAGCAGAAGAATTGACCAATCCTCATAGGCCTTATGGAAGCAACAAAAGTTCGCTTGAAGAAATCAGAAGAATCAGAGAAGCAGGTGGATGGATTGTCAATGGAAGGATTTGCGGAGACATTGCTGTGTCCCGCTCTTTTGGTGACATGAGGTTCAAGACAAAGAAGAACGAGATGCTGGAGAAGGGATTGGAGGAAGGGAGATGGTCCCAAAAATTTGTTTCTCGTGTACAATTCACTGGAGACTTGGTCGTTGCATCTCCTGATGTTTTCCAAGTAGCTCTTGGATCAGATGCAGAATTTTTACTGTTAGCATCTGATGGCTTATGGGATTATATGAACAGCTCAGAAGCGGTAACCTTTGTTAGGAATGAACTTCGACAACATGGAGATGTTCAGGTAGCTTCTGAAGCACTTGCACGTGCAGCACTGGACCGACGCACACAAGATAATGTCAGCATCATCATTGCAGATTTAGGGCGGACAGACTGGCAAAGTTTGCCACTGCAGCAACAAAATTTATTTCTCGAATTGGTGCAAGCTCTTGGTACCATTGGCATTGTGACGCTTGGGATTTGGATGTCATCTCAGTTTAGTTTATGA 1518 0.4605 MFENSFLKTVFCSLEKKKTYFVIKTRFFTQFDSGIRIGSSNPNTRKAPQQSGAKTHFLGKQVDPFGDPTESTDNPRWANVKSRPFKTVRGRASLSYPLYANHTYPTCFSLSTPPPSPLQMALLSQQLQRFFLTTLNCTSNLKATKKNNSVALKERARCCSAIAIDAPSFSGVAGIRWGLCRLQGPREEMEDEAVVRSDGLDGFSFAAVFDGHAGFSSVKFLRDELYKDCVAALQGGLLLSGKNFNIIREALEKAFESADAKLLNWLETTGEDVESGSTATVLLIGDDMVFISHVGDSCVVLSRSGKAEELTNPHRPYGSNKSSLEEIRRIREAGGWIVNGRICGDIAVSRSFGDMRFKTKKNEMLEKGLEEGRWSQKFVSRVQFTGDLVVASPDVFQVALGSDAEFLLLASDGLWDYMNSSEAVTFVRNELRQHGDVQVASEALARAALDRRTQDNVSIIIADLGRTDWQSLPLQQQNLFLELVQALGTIGIVTLGIWMSSQFSL* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1329 505 Gene3D - 175 470 IPR036457 -
Vvi16g1329 505 PANTHER PROTEIN PHOSPHATASE 2C 146 462 IPR015655 GO:0004722|GO:0006470
Vvi16g1329 505 FunFam Protein phosphatase 2C 57 175 471 - -
Vvi16g1329 505 ProSiteProfiles PPM-type phosphatase domain profile. 176 464 IPR001932 -
Vvi16g1329 505 Pfam Protein phosphatase 2C 178 457 IPR001932 -
Vvi16g1329 505 SUPERFAMILY PP2C-like 171 465 IPR036457 -
Vvi16g1329 505 CDD PP2Cc 175 464 IPR001932 -
Vvi16g1329 505 SMART PP2C_4 166 462 IPR001932 -
Vvi16g1329 505 ProSitePatterns PPM-type phosphatase domain signature. 205 213 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1329 Vvi-Chr16 21771778 21776235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1329 120 438 PP2C-type Phosphatase Gene Family AT4G27800 63.354 9.48e-148 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1329 K04457 - vvi:100264113 759.599