Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1315 ATGGCGCCAAATTCCCTTTCCCGCGAACCAAAAAAAAAAGCGCGCGAAACTCTTTCGTTGGCTCTTACACTCAAATACCGACCGCCCACTCTCCACACCCAATCTCACACCTCTCTCTCTTTCTCTCTCCCTACAGCAATGGCTTCTTCACAAACCAGAACCCTTCGTAGACGCCGAACCCAAGCTTCAAAACCCATATCTCAATCTCCTCTAAAGTCCCTCTCAAAGTCCCAGATCGACGACTACTACAGCGATGCCGTCTGCGAAGAATGCGGCTCTGGTGACGCCGCCGACGAGCTGCTCCTGTGTGACAAGTGCGATCGGGGGTTTCATCTATTTTGCCTTAGACCCATCATCGTTTCTGTGCCCAAAGGGCCATGGTTCTGCCCTTCGTGCTCCAGTCAGAAGAAGCTCAAGTATTTTCCTCTGGTCCAAACCAAAATTGTTGATTTCTTTCGGATTCAGAGGTCTACAGAATCAACACAAAAGCTTAATTATGATAGCCAAAAGAGACGTAAAAGAAGCAGCAGCTTAGTCGTGTCAAAGAAGAAGAGGAAGCTGCTGCCCTTCAATCCAACCGAAGACCCTTTGAGGAGAATGGAACAAATGGCATCACTGGCAACAGCATTAACAGCTACCAGGACAGAGTTCAGCAATGAGCTCACTTACATCCCTGGTATGGCTCCTAAGTCTGCAAATCGAGCAGTTCTTGAGCATGGAGGAATGCAGGTTTTATCTAAAGAAGACACTGAAACCTTAAATTTATGCAAAAGCATGATGGGAAGAGGAGAATGGCCACCTCTTATGGTTGTTTTTGATCCTAAAGAAGGGTTCACAGTTGAGGCAGATAGGTTCATAAAAGATCTAACAATAATAACAGAGTATGTTGGAGATGTTGATTACTTGAAGAACAGAGAAAACGATGAAGGGGATAGCATGATGACCCTCATTTCTGCTAATGAGCCTTTAAGAAGCCTTGTCATCTGTCCTGACAAGCGTGGTAACATTGCCCGTTTCATCAATGGAATCAACAATCACATGCCGGATGGTAAGAAGAAGCAGAATGTCAAGTGTGTGAGGTTTGAAGTCAACGGCGAGTGTCGGGTTTTACTGATAGCAAGCAGAGACATACCAAAGGGAGAAAGATTGTATTATGACTACAATGGATATGAGAATGAATACCCAACTCAACACTTTGTCTAA 1203 0.4514 MAPNSLSREPKKKARETLSLALTLKYRPPTLHTQSHTSLSFSLPTAMASSQTRTLRRRRTQASKPISQSPLKSLSKSQIDDYYSDAVCEECGSGDAADELLLCDKCDRGFHLFCLRPIIVSVPKGPWFCPSCSSQKKLKYFPLVQTKIVDFFRIQRSTESTQKLNYDSQKRRKRSSSLVVSKKKRKLLPFNPTEDPLRRMEQMASLATALTATRTEFSNELTYIPGMAPKSANRAVLEHGGMQVLSKEDTETLNLCKSMMGRGEWPPLMVVFDPKEGFTVEADRFIKDLTIITEYVGDVDYLKNRENDEGDSMMTLISANEPLRSLVICPDKRGNIARFINGINNHMPDGKKKQNVKCVRFEVNGECRVLLIASRDIPKGERLYYDYNGYENEYPTQHFV* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1315 400 ProSiteProfiles SET domain profile. 266 388 IPR001214 GO:0005515
Vvi16g1315 400 CDD PHD_BAZ2A_like 88 132 - -
Vvi16g1315 400 MobiDBLite consensus disorder prediction 50 72 - -
Vvi16g1315 400 SUPERFAMILY FYVE/PHD zinc finger 81 141 IPR011011 -
Vvi16g1315 400 Gene3D SET domain 172 400 IPR046341 -
Vvi16g1315 400 CDD SET_ATXR5_6-like 263 400 - -
Vvi16g1315 400 Pfam SET domain 300 388 IPR001214 GO:0005515
Vvi16g1315 400 Pfam PHD-finger 88 134 IPR019787 -
Vvi16g1315 400 ProSiteProfiles Zinc finger PHD-type profile. 85 135 IPR019787 -
Vvi16g1315 400 FunFam Histone-lysine N-methyltransferase ATXR5 172 400 - -
Vvi16g1315 400 ProSitePatterns Zinc finger PHD-type signature. 88 132 IPR019786 -
Vvi16g1315 400 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 159 398 - -
Vvi16g1315 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 141 IPR013083 -
Vvi16g1315 400 SMART PHD_3 87 133 IPR001965 -
Vvi16g1315 400 SUPERFAMILY SET domain 259 388 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1315 Vvi-Chr16 21677420 21681683 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1315 83 149 C2H2 Transcription Factor Family AT3G01460 38.806 9.54e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi16g1315 SET 2.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1315 K24406 - vvi:100250306 674.085