Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1302 ATGGAGAAGGATGCAAATGTTACTGTCTCACTTGTTCCAGCCTCAGAGTTACTCTCTCAGACTATCCTGACTGTCTTTGACACTGTACATGCTGCCAAAGCAGTCATCATTCAAGATGCGAATTTCCAGCAATTCGCAATTTACTTGGAGATGGTCACAGTGGTCCTGAAAGAGTTGGCCAATCTAAAGATAGAGGATTCTGAGAGGTTAAAAATTGCTGTTGCAAATCTTAATCGAGAGATTAAGGTTGCAAAGCAGCTAACTGTGGAGTGTGGGAAGAGAAACAAGATCTATCTCTTAGTCAATTGCCAGAGAATTTCCAAGGACTTAGAGTGTATCACAAAAGAGATTAGTCGGGTTCTAGGCCTTATTCCTGATATTTCATTCAATATTAATGATAAGATTAGTAAACTACGCAAGGATATGTTAGATTCCAAGTATCAAGCAACTGCAGTGGAGGAAGAAATTCTGGAAAAAATTGAAACTGGTATACGGGAGAGGAATGTCGACAAATCCTATGCAAATAATTTGCTCCTCTGTATTGCTGAGGCTGCTGGGATTTCAACTGAGCAGTCAGTATTGAAGAGAGAGTTAGAAGAATTCAAGAGTGAAATAGAGGATGTGAACCTCAGAGAAGACAGTGCAGAAGCTTTAAAAATGGGAAAGATTGTTGCATTGCTTGCAAAAGCAGATGCTGCCACATCTCCTGAGGAGAAAGAAATCAAATATTTTAATCAGCGAAATTCTTTGGGTACGCAACGACTGGAACCTCTACATGCATTCTACTGTTCAATCACTCATGATGTCATGGTGGATCCTGTGGAAACTTCCTCAGGGCAGACATTTGAGAGAAGTGCAATAGAGAAGTGGATTGCAGAAGGGAATAAGCTCTGTCCATTGACAGCGACTCCCTTGGACATGTCAGCTTTACGACCTAACAAAATTCTTCGACAATCAATTGAAGAATGGAAGGATAGGAACACCATGATTATGCTTGCTTCTCTCAAACCTGCACTCCATTCAAATGATGAGCAAGAAGTTCTTCAATCTCTGGGCAAGCTGCATGATCTATGTATTGAACGAGAGTTGCACCGTGAATGGGTAATGATGGAGGAGTACTGTCCAATTCTTATTGGACTTCTTGGTGCAAAAAACCGTGAAATAAGAAAACTTTCTCTAGTCATCCTTTGCATTCTTGCAAAGGATAGCAATGAGAATAAGGAAAGAATTGCTAGAGTGAATAATGCAATTGAATCAATTGTTCGTTCCCTTGCCCGCCAGATTGGGGAAAGCAAGTTAGCGTTGCAATTACTATTGGAGCTATCAAGAAGTAATCTAGTGCGTGACTTCATCGGCAATGTTCAGGGTTGCATATTTCTCTTAGTGACTATCTCCAGTGGTGATGATACTCAAGCTGCCATAGATGCAAAGGAGCTTTTGGAAAATCTCTCTTTTCTTGATCAGAATGTTATTCAGATGGCAAGGGCAAATTATTTTAAACCTTTGTTGCGCCTTCTTTCTTCAGGGCCAGTGAATGCTAAAATGACTGTGGCTGCTACTTTGTCAGAGATTGAGTTAACTGACAATAATAAATTGAGTCTATTTGAAGATGGAGCACTTCAGCCACTTCTAGTATTGCTCTCACATAGCGATATGGAGATGAAGAAAGTGGCTGTTAAAGCTCTTTATAACCTCTCCAGTGTGCCACAAAATGGATTGCGGATGATTAGAGAAGGTGCTGCAGGCCCATTGTTTGAACTTCTCTACCGTCACAGCTTGTCTTCCCCAAGTTTGCGTGGAGAGGTGGCAGTTATCATTATGCACCTTGCAATATCAACCACAACCCTGGAAGCTGATCAAATGCATGTTTCATTGTTGGAATCTGAGGAAGATATATTCAAGCTTTTCTCTCTCATATCCTTGACAGGACCTGACATACAACAAATTATTCTCCGAACTTTTCATGCTATGTGTCAATCTCATTCTGGTTTAGACATCAGAACTAAGTTAAGGCAGCTCTCTTCTGTTCGAGTACTAGTTCAATTATGCGAGTTTGACAACCATACAGTACGTGCAAATGCTGTGAAGCTCTTTTGTTGCTTGACAGAAGATGGTGAAGACAGTACCTTTGTAGAGCATGTGAGCCAGAGATACATAGAGACATTAATCAGAATAATCAAAACTTCTGATAATGTGGAAGAGATTGCTGGTGCAATGAGTATCATCTCTAACCTTCCTAAGGAGGCCCATATAACCCAGTGGCTTCTTGATGCCGGAGCTCTTCAAATCATTTTTACTTGTCTTACTGATGGAAATAGTAGTGCTTCATACAAAAGGCAATTAATTGAGAATGCTGTTGGCGCTCTTTGTCGTTTCACTGTTTCAACAAATCAGAATTGGCAAAAGGAGGTAGCCAAATGTGGTTTTTTCCCAATCCTGCTACAGTTTCTAGATTCTGGAACAGCTTTGACAAAGAGAAATGCAGCAGTTTCACTTAAGCAATTTTCAGAAAGTTCCAATGGCTTAAGCCAACCAGTGAAGAAGCATGGAGCTTTTTGGTGCTGTTTGGCCTCTCGTGAAACTGGTTGCCGAGTGCACTTAGGCATCTGTACAGTTGAGTCCTCATTTTGTCTTTTGGAGGCTAATGCTGTAGAACCCCTAGTGAGGGTGCTTGTGGAACCAGATGTTGGAGCTTGTGAAGCTTCTTTAGATGCACTTTTGACATTGATTGACGGTGAAAGATTGCAAAATGGGAGTAAGGTGCTTTCTGAAGTTAATGCTATTGTTCCAATTATAAGGTTATTGAGTTCATCGTGTACCAAGTTGCAGGAGAAAGCTCTGAAGGCTTTAGAAAGGATCTTTCGACTAATTGATTTCAAACAGAAGTATGGGAATTTAGCCCAAATGCCATTAGTTGACATTACTCAGAGGGGACATGGTGGTATGAAATCCTTAGCTGCCAAAGTACTTGCTCACTTGGATGTGCTCCATGAACAATCTTCTTACTTCTAA 3012 0.4077 MEKDANVTVSLVPASELLSQTILTVFDTVHAAKAVIIQDANFQQFAIYLEMVTVVLKELANLKIEDSERLKIAVANLNREIKVAKQLTVECGKRNKIYLLVNCQRISKDLECITKEISRVLGLIPDISFNINDKISKLRKDMLDSKYQATAVEEEILEKIETGIRERNVDKSYANNLLLCIAEAAGISTEQSVLKRELEEFKSEIEDVNLREDSAEALKMGKIVALLAKADAATSPEEKEIKYFNQRNSLGTQRLEPLHAFYCSITHDVMVDPVETSSGQTFERSAIEKWIAEGNKLCPLTATPLDMSALRPNKILRQSIEEWKDRNTMIMLASLKPALHSNDEQEVLQSLGKLHDLCIERELHREWVMMEEYCPILIGLLGAKNREIRKLSLVILCILAKDSNENKERIARVNNAIESIVRSLARQIGESKLALQLLLELSRSNLVRDFIGNVQGCIFLLVTISSGDDTQAAIDAKELLENLSFLDQNVIQMARANYFKPLLRLLSSGPVNAKMTVAATLSEIELTDNNKLSLFEDGALQPLLVLLSHSDMEMKKVAVKALYNLSSVPQNGLRMIREGAAGPLFELLYRHSLSSPSLRGEVAVIIMHLAISTTTLEADQMHVSLLESEEDIFKLFSLISLTGPDIQQIILRTFHAMCQSHSGLDIRTKLRQLSSVRVLVQLCEFDNHTVRANAVKLFCCLTEDGEDSTFVEHVSQRYIETLIRIIKTSDNVEEIAGAMSIISNLPKEAHITQWLLDAGALQIIFTCLTDGNSSASYKRQLIENAVGALCRFTVSTNQNWQKEVAKCGFFPILLQFLDSGTALTKRNAAVSLKQFSESSNGLSQPVKKHGAFWCCLASRETGCRVHLGICTVESSFCLLEANAVEPLVRVLVEPDVGACEASLDALLTLIDGERLQNGSKVLSEVNAIVPIIRLLSSSCTKLQEKALKALERIFRLIDFKQKYGNLAQMPLVDITQRGHGGMKSLAAKVLAHLDVLHEQSSYF* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1302 1003 SUPERFAMILY ARM repeat 634 957 IPR016024 -
Vvi16g1302 1003 CDD RING-Ubox_PUB 260 305 IPR045210 -
Vvi16g1302 1003 SMART Ubox_2 260 323 IPR003613 GO:0004842|GO:0016567
Vvi16g1302 1003 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1003 - -
Vvi16g1302 1003 SMART arm_5 797 837 IPR000225 GO:0005515
Vvi16g1302 1003 SMART arm_5 871 911 IPR000225 GO:0005515
Vvi16g1302 1003 SMART arm_5 915 955 IPR000225 GO:0005515
Vvi16g1302 1003 SMART arm_5 748 794 IPR000225 GO:0005515
Vvi16g1302 1003 SMART arm_5 527 567 IPR000225 GO:0005515
Vvi16g1302 1003 SUPERFAMILY ARM repeat 334 613 IPR016024 -
Vvi16g1302 1003 Pfam Armadillo/beta-catenin-like repeat 528 567 IPR000225 GO:0005515
Vvi16g1302 1003 Gene3D - 329 430 IPR011989 -
Vvi16g1302 1003 Coils Coil 191 218 - -
Vvi16g1302 1003 Coils Coil 67 87 - -
Vvi16g1302 1003 Gene3D - 859 992 IPR011989 -
Vvi16g1302 1003 ProSiteProfiles U-box domain profile. 256 330 IPR003613 GO:0004842|GO:0016567
Vvi16g1302 1003 Pfam U-box domain 261 327 IPR003613 GO:0004842|GO:0016567
Vvi16g1302 1003 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 328 IPR013083 -
Vvi16g1302 1003 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 538 580 IPR000225 GO:0005515
Vvi16g1302 1003 SUPERFAMILY RING/U-box 247 329 - -
Vvi16g1302 1003 Gene3D - 431 857 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1302 Vvi-Chr16 21583560 21588492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1302 259 1003 U-box Gene Family AT1G76390 27.409 1.31e-60 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1302 - - vvi:100253690 1922.13