Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1296 ATGGGAGAGACTCGGTTCTTGCAAGAACTGGTTCTCTATGCAGCCAGTGCTGCTCTGAGCTGTTTGGTGTTGTTTGCGGGGCTTCGACATCTGGACCCGAACCGAGAATCCTCCAAAAAAGCCCTTGAACACAGGAAGGAAATCGCCAAGCGCTTGGGTCGACCCCTCATTCAAACCAATTCATATGAGGATGTAATAGCCTGTGATGTCATAAACCCTGACCATATTGATGTGGAATTTGATTCCATTGGAGGATTGGAAACCATTAAACAAGCATTAGTTGAACTGGTAATTCTTCCGCTACGAAGACCTGAGCTGTTTTCACATGGGAAGCTTCTGGGTCCCCAGAAAGGAGTCTTGTTATATGGACCCCCTGGCACTGGAAAGACCATGCTGGCCAAAGCTATTGCAAAGGAGTCTGGAGCCGTTTTTATTAATGTGAGGATATCAAATTTAATGAGCAAATGGTTTGGTGATGCGCAAAAACTTGTGGCTGCTGTATTTAGCTTGGCTTACAAACTCCAACCTGCTATTATCTTCATTGATGAGGTTGATACTTTTTTGGGTCAGCGCCGGACAACAGACCATGAAGCAATGGCAAACATGAAAACTGAGTTCATGGCTTTATGGGATGGTTTTACCACTGATCAGAATGCTAGGGTGATGGTCCTTGCTGCTACTAATCGTCCATCAGAACTTGATGAAGCAATTCTTCGACGTCTTCCTCAGGCCTTTGAGATTGGGATACCGGATCGCAGAGAGAGGGTGGAGATACTGAAGGTGGTTTTGAAGGGTGAGAAGGTAGCAGATGACATCAACTATGACCGCATTGCTAGCTTGTGTGAGGGGTACACTGGTTCAGATATTCTTGAGCTCTGCAAGAAAGCAGCCTATTTTCCTATCAGAGAGCTACTAGATGACGAGAAGAATGGGAAGCCATCTCCTGCACCACGGCCATTGTCACAGTTGGATCTGGAGAAAGTTCTTGCCACATCAAGAAAGACAAAGGTTGCTGCAAGTGAATACACTGGTTTGAACCCACAATCATCGGGGTTCAATCTGCAATTGGAAAATGAACTGTATCGGAAGCTTTCGGCTTACATCAACTCTTTGGCTTCAGTCGAGGATTCTGATTTTGCGAACCTTGTGACTGGTTCTAGATCAAACGACGTCGTTTTGTCTCTGGACCCGAACCAGACTGTTTTTGATAGTTACCTTGGCGCCAGAGTCGCGTGGACGAACGTCGTTGGAGAATCGGACGGTCGGAGATGTTTTGTGTTGCGGATTAGGAAGAAGGATAAGCGTAGGATTCTCCGTCCGTACCTTCAGCACATACTGGCTAAATATGAGGAGTTTGAGAAAGAATTGAAGCTGTACATCAACTGCGAGAGTCGTCGGTTGAGCGATGGACGGTGGAGATCTGTTCCGTTCACGCATCAAGCGACGATGGAAACTGTGGCGATGGACTCCGATCTCAAGAGCAAGGTGAAGTCTGATCTCGAGCTCTTCCTCAAATCGAAGCAGTACTACCAAAGGCTCGGCCGTGTTTGGAAACGGAGTTACCTCCTTCACGGTGCGCCCGGCACCGGAAAATCGAGCTTCGTCGCCGCCATGGCGAAACTCCTGTGCTACGACGTCTACGATGTGGACCTCTCTCAGGTCTCCGACGATGCCGATCTCAAGCTCCTCCTTCTGCAAACCACACCCCGGTCGTTGATCCTGATTGAGGATCTCGACCGGTTCCTGATCGACAAATCAACGACCGTCAGCCTCCCCGGCGTGCTGAACTTCATGGACGGAGTACTCTCGTGCTGCGGCGAGGAGCGCGTGATGGTATTCACAATGAACAGCCCAGATCAAATCGATCCAACGGTCCTAAGACCCGGCAGAATCGACGTTCACGTACAGTTCGGCCTCTGCGATTTCTCATCGTTCAAAATGTTAGCCGATAGCCACCTAGGAATCAAAGAGCACCGGCTTTTCCCTCAGGTCGAAGAGATTTTCCAGACCGGAGCGAGTCTCTGCCCGGCCGAGATAGGCGAAATCATGACATCAAATCGGAATTCCGCGACCCGGGCCCTCAAATCGGTTATCAACGCATTGCAAACCAACACAGCCAATAAAATTCGGTTGACTCAAAGCTCGTCGGGCCGGTCCACAGAGGAGTCAGCTGAACCGGGTGGTGTGATTTGCAGGGAGAGCGTACACACAGTCAGGGAGTTTCGGAAACTCTATGGGCTCTTGAGGAGAAGTGGTAGAAAAGAAGAGCCGTTGGATTTGGGCTCCACCGATAAGGACGCTCCAAGGAATGGATCATGA 2319 0.4937 MGETRFLQELVLYAASAALSCLVLFAGLRHLDPNRESSKKALEHRKEIAKRLGRPLIQTNSYEDVIACDVINPDHIDVEFDSIGGLETIKQALVELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDTFLGQRRTTDHEAMANMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGIPDRRERVEILKVVLKGEKVADDINYDRIASLCEGYTGSDILELCKKAAYFPIRELLDDEKNGKPSPAPRPLSQLDLEKVLATSRKTKVAASEYTGLNPQSSGFNLQLENELYRKLSAYINSLASVEDSDFANLVTGSRSNDVVLSLDPNQTVFDSYLGARVAWTNVVGESDGRRCFVLRIRKKDKRRILRPYLQHILAKYEEFEKELKLYINCESRRLSDGRWRSVPFTHQATMETVAMDSDLKSKVKSDLELFLKSKQYYQRLGRVWKRSYLLHGAPGTGKSSFVAAMAKLLCYDVYDVDLSQVSDDADLKLLLLQTTPRSLILIEDLDRFLIDKSTTVSLPGVLNFMDGVLSCCGEERVMVFTMNSPDQIDPTVLRPGRIDVHVQFGLCDFSSFKMLADSHLGIKEHRLFPQVEEIFQTGASLCPAEIGEIMTSNRNSATRALKSVINALQTNTANKIRLTQSSSGRSTEESAEPGGVICRESVHTVREFRKLYGLLRRSGRKEEPLDLGSTDKDAPRNGS* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1296 772 Gene3D - 77 334 IPR027417 -
Vvi16g1296 772 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 123 142 - -
Vvi16g1296 772 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 763 772 - -
Vvi16g1296 772 SMART AAA_5 517 641 IPR003593 GO:0016887
Vvi16g1296 772 SMART AAA_5 115 251 IPR003593 GO:0016887
Vvi16g1296 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 306 IPR027417 -
Vvi16g1296 772 Gene3D - 473 639 IPR027417 -
Vvi16g1296 772 Pfam ATPase family associated with various cellular activities (AAA) 522 638 IPR003959 GO:0005524|GO:0016887
Vvi16g1296 772 Pfam ATPase family associated with various cellular activities (AAA) 119 248 IPR003959 GO:0005524|GO:0016887
Vvi16g1296 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 701 IPR027417 -
Vvi16g1296 772 ProSitePatterns AAA-protein family signature. 221 240 IPR003960 GO:0005524|GO:0016887
Vvi16g1296 772 FunFam ATPase family AAA domain-containing protein 1 77 254 - -
Vvi16g1296 772 Gene3D - 250 330 - -
Vvi16g1296 772 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Vvi16g1296 772 Pfam AAA+ lid domain 271 306 IPR041569 -
Vvi16g1296 772 CDD RecA-like_ATAD1 82 247 - -
Vvi16g1296 772 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 26 362 - -
Vvi16g1296 772 Pfam Domain associated at C-terminal with AAA 356 415 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1296 Vvi-Chr16 21519482 21527110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1296 513 639 Calmodulin-binding Proteins AT3G56690 28.169 4.50e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1296 K22530 K08900 vvi:104882242 806.594