Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1289 ATGCAGATCTTCGTGAAAACCCTAACTGGGAAGACCATCACCCTCGAGGTTGAATCCAGCGATACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCTCCGGACCAGCAGCGACTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGCACTCTTGCTGATTACAATATCCAGAAAGAATCAACTCTGCATCTGGTTCTGAGGCTTCGTGGTGGTATTATTGAGCCATCCTTGATGCAATTGGCTAGGAAATACAATCAGGACAAAATGATCTGCCGCAAATGTTATGCACGCCTGCACCCACGTGCTGTCAACTGCAGGAAAAAGAAGTGTGGCCACAGCAACCAGTTGAGGCCAAAGAAGAAGATCAAGTAG 387 0.4858 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMQLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1289 128 Pfam Ribosomal L40e family 78 127 IPR001975 GO:0003735|GO:0005840|GO:0006412
Vvi16g1289 128 FunFam ubiquitin-60S ribosomal protein L40 79 128 - -
Vvi16g1289 128 PANTHER UBIQUITIN 1 87 - -
Vvi16g1289 128 SMART ubq_7 1 72 IPR000626 GO:0005515
Vvi16g1289 128 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Vvi16g1289 128 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vvi16g1289 128 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vvi16g1289 128 PRINTS Ubiquitin signature 53 74 IPR019956 -
Vvi16g1289 128 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vvi16g1289 128 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vvi16g1289 128 FunFam Ubiquitin-60S ribosomal L40 fusion 1 78 - -
Vvi16g1289 128 Gene3D - 79 128 IPR038587 -
Vvi16g1289 128 CDD Ubl_ubiquitin 1 76 - -
Vvi16g1289 128 SUPERFAMILY Zn-binding ribosomal proteins 76 127 IPR011332 GO:0006412
Vvi16g1289 128 SMART Ribosomal_L40e_3 77 128 IPR001975 GO:0003735|GO:0005840|GO:0006412
Vvi16g1289 128 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vvi16g1289 128 Gene3D - 1 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1289 Vvi-Chr16 21447525 21450318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1289 1 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 99.219 1.13e-92 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1289 K02927 - vvi:100253716 259.61