Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1287 ATGATGGAGAGCAGAGGGTGTTCGGCAGAAGAAGCAGGAGAGGAGGGGGAGCAGCTGACCAGGAAGAAGAGCAGGAACAAGAAGAGGTTCAGTGACGAGCAAGTTCAGTATCTGGAGTCTATTTTCGAGTCGGATAGTAAGCTTGAGGCGAGGAAGAAGGAGGAGCTGGCGGTGGAGCTTGGGATGCAGCCGAGACAGGTTGCTATATGGTTTCAGAACAAGAGAGCGAGGTGGAAGTCGAAACAGATAGAGCACGACTACAAAGCACTCAGAGCTAGCTACGATGCTTTAACGTCTCGGTTCGAGTCCTTGAAGGAGGAGAAACAGTCTTTACTCACACAGTTGCAGAAGCTGGGTGATCTGATGGAAAAACCTGGTGATGGGGTGGGAAGCGGTTTCGGAGGAAACAGCAGTACTGATGGGGGATCAGACACCGGAGATGATGCAAAATTGAGCTACTTAGAAGGTGGCCTGGACCACAGATTAGTCAAGTGCTCAGACGATGATAAGAGCCGAAGTGCAGGCTACTTTGGCCACCAAGAAGGGCCTGAGCTTCTCGACAAATGTGAAAATGCAGATATTTCCTTAGAATCAACCGGAAAATGGTTCGGTTTCGCCTCAGGCGGCTTCCATGATCAGTCATGTACCATTTCACAGTTGTGGGACTTCTGGAGTAGTTAA 681 0.4993 MMESRGCSAEEAGEEGEQLTRKKSRNKKRFSDEQVQYLESIFESDSKLEARKKEELAVELGMQPRQVAIWFQNKRARWKSKQIEHDYKALRASYDALTSRFESLKEEKQSLLTQLQKLGDLMEKPGDGVGSGFGGNSSTDGGSDTGDDAKLSYLEGGLDHRLVKCSDDDKSRSAGYFGHQEGPELLDKCENADISLESTGKWFGFASGGFHDQSCTISQLWDFWSS* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1287 226 Gene3D - 16 89 - -
Vvi16g1287 226 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 15 155 IPR045224 GO:0003700
Vvi16g1287 226 MobiDBLite consensus disorder prediction 124 149 - -
Vvi16g1287 226 Pfam Homeobox associated leucine zipper 81 122 IPR003106 GO:0006355|GO:0043565
Vvi16g1287 226 MobiDBLite consensus disorder prediction 1 29 - -
Vvi16g1287 226 Coils Coil 87 121 - -
Vvi16g1287 226 Pfam Homeodomain 25 79 IPR001356 GO:0003677
Vvi16g1287 226 CDD homeodomain 25 82 IPR001356 GO:0003677
Vvi16g1287 226 PRINTS Lambda-repressor HTH signature 52 61 IPR000047 GO:0003677
Vvi16g1287 226 PRINTS Lambda-repressor HTH signature 61 77 IPR000047 GO:0003677
Vvi16g1287 226 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Vvi16g1287 226 SUPERFAMILY Homeodomain-like 17 82 IPR009057 -
Vvi16g1287 226 MobiDBLite consensus disorder prediction 8 29 - -
Vvi16g1287 226 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Vvi16g1287 226 SMART HOX_1 23 85 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1287 Vvi-Chr16 21439666 21440769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1287 29 225 Homeobox Transcription Factor Family AT3G61890 45.320 2.76e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi16g1287 Homeodomain 7.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1287 K09338 - vvi:100252202 414.846