Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1285 ATGGGGAGTGGGGAGAAGAATTTTCTCAATTTCCACATGCATGTCCACCATGGGAATGGTAATAATAAGAAGGAGATGCGGGACATCCCAAAGGGGTGTCTTGCAGTTTTGGTGGGTCAAGGGGAGGAGCAGCAGAGGTTTGTCATCCCCGTCATTTACATCAATCATCCTCTGTTCATGGAGCTGTTGAAGGAGGCAGAAGAGGAGTATGGGTTTGAGCAGAAAGGACCCATAACCATCCCATGCCATGTGGAGGAGTTTCGCTATGTCCAAGGCATGATTGACAAGGAGAAGTCCCACCACCACCACAGCCACCACCACGACCTTCACGACCACCACAACCACCACCACTGCTTCTGGGTTTGA 366 0.5082 MGSGEKNFLNFHMHVHHGNGNNKKEMRDIPKGCLAVLVGQGEEQQRFVIPVIYINHPLFMELLKEAEEEYGFEQKGPITIPCHVEEFRYVQGMIDKEKSHHHHSHHHDLHDHHNHHHCFWV* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1285 121 Pfam Auxin responsive protein 23 93 IPR003676 GO:0009733
Vvi16g1285 121 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 23 89 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1285 Vvi-Chr16 21395267 21395632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1285 28 90 Calmodulin-binding Proteins AT5G20810 57.143 9.58e-20 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1285 K14488 - vvi:100241753 214.927