Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1284 ATGGGGCATTGCTGCAGCAAAGACATTTCCGTGGTGAAAGATGACACGGTCGCCGGCGAGTCTGCCGCCGGCATCGGAGGGAAACCAACAGCGCCGCTGCGTCTGGTCGGAAATGGCGCGGTTGACGTTAAGAGGACTCCAGCTCACTCCTTCAACAGCCCTTGCCCTAGCCCGTACCCTCAGGGGAGTAGTCCTCTGCCTCCCGGAATTGCTCCTTCGCCGGCGAGGACTCCCCGTAGTAGAGTCCGGTGGCCGTTCCCGCCGCCTTCGCCGGCAAAGCCGATCATGTCGTCGATACTGAAGCGGCGAGGGTCGGCGAAGCCGAAGGAGGGGCCGATACCGGAGGAAGGCGCCGGAGAAGGCGAAACGCAGCTGGATAAGAGTTTCGGATATGCGAAGAACTTTTCGTCGAAGTTTGAATTGGGAAAGGAGGTTGGGCGAGGGCACTTTGGACATACTTGTTGGGCTAGGGGCAAAAAAGGTGAGCTCAAAGGTCAAACGGTGGCTGTGAAAATCATCTCCAAAGCTAAGATGACAACAGCAATAGCGATTGAAGATGTTCGTAGGGAGGTGAAAATTTTAAAAGCTTTGTCTGTGCATAAGAATTTGGTCAAATTTCACGATGCATGTGAAGATGCCAGTAATGTCTACATAATCATGGAATTATGTGAAGGTGGAGAACTACTAGACAGGATTTTATCAAGAGGTGGAAGATACAGAGAAGAAGATGCTAAAGCTATTGTTGTGCAAATTCTAAATGTGGTTGCCTTTTGTCATCTCCAAGGTGTTGTGCACCGTGATCTAAAACCAGAGAATTTTCTTTTTACCACAAGGGATGAGGATGCTCCGATGAAGGTTATTGATTTTGGTCTTTCTGATTTTATTAGAACAGATCAACGTCTCAATGATATTGTTGGAAGTGCATACTATGTTGCACCCGAAGTACTCCACAGATCCTACAATCTTGAAGCTGATGTTTGGAGCATTGGCGTGATAACATATATATTGTTATGTGGAAGCCGGCCTTTCTGGGCACGAACTGAATCAGGAATTTTTCGTTCCGTTTTAAGAGCTGATCCTAACTTTGATGATTTACCTTGGCCAGCGGTATCACCAGAAGCCAAAGATTTTGTAAAAAGGCTTCTGAACAAGGATTACAGGAAAAGAATGACTGCTGCCCAAGCTCTAACTCACCCATGGTTGCGGGATGAAAACCATGCTGTGCCTCTTGATATTCTGGTCTACAAGTTGGTCAAATCATATGTTCGTGTCTCACCTTTCAAGCGTGCAGCACTAAAGGCTCTCTCAAAAGCTCTGACCGAGGATGAGCTTGTGTACCTGAGGGCTCAGTTTAGGCTATTGGAACCAAAAAATGGCCGTGTCTCTCTTGAGAATTTTAAAATGGCTCTCATGAGAAATGCAACTGATGCCATGAAAGAATCCAGGGTGGCTGACATTTTAAATATGATGGAATCACTCTCTTTTAAGAAAATGGATTTTGAAGAGTTCTGTGCTGCTGCAATAAGCCCGCTCCAGCTTGAGGCTCTTCAAGGGTGGGAGAAGATTGCTACTACAGGTTTTGAGTTTTTTGAACAGGAAGGAAACCGAGTAACCACGGTTGAGGAATTGGCACGGGAAATGAACGTGGGCCCTGCAGCATACTCTGCGTTCAATGGTTGGATCAGAAGTTCCGATGGAAAACTCAGCTTCCTTGGATTTACCAAATTTTTGCATGGCAGTGTGTCGCGTCCTATTACAAGACAGCAACAGCATGTCTAG 1779 0.4705 MGHCCSKDISVVKDDTVAGESAAGIGGKPTAPLRLVGNGAVDVKRTPAHSFNSPCPSPYPQGSSPLPPGIAPSPARTPRSRVRWPFPPPSPAKPIMSSILKRRGSAKPKEGPIPEEGAGEGETQLDKSFGYAKNFSSKFELGKEVGRGHFGHTCWARGKKGELKGQTVAVKIISKAKMTTAIAIEDVRREVKILKALSVHKNLVKFHDACEDASNVYIIMELCEGGELLDRILSRGGRYREEDAKAIVVQILNVVAFCHLQGVVHRDLKPENFLFTTRDEDAPMKVIDFGLSDFIRTDQRLNDIVGSAYYVAPEVLHRSYNLEADVWSIGVITYILLCGSRPFWARTESGIFRSVLRADPNFDDLPWPAVSPEAKDFVKRLLNKDYRKRMTAAQALTHPWLRDENHAVPLDILVYKLVKSYVRVSPFKRAALKALSKALTEDELVYLRAQFRLLEPKNGRVSLENFKMALMRNATDAMKESRVADILNMMESLSFKKMDFEEFCAAAISPLQLEALQGWEKIATTGFEFFEQEGNRVTTVEELAREMNVGPAAYSAFNGWIRSSDGKLSFLGFTKFLHGSVSRPITRQQQHV* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1284 592 Gene3D Transferase(Phosphotransferase) domain 1 229 417 - -
Vvi16g1284 592 Gene3D Phosphorylase Kinase; domain 1 132 228 - -
Vvi16g1284 592 FunFam Calcium-dependent protein kinase SK5 311 406 - -
Vvi16g1284 592 Pfam Protein kinase domain 139 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1284 592 SMART serkin_6 139 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1284 592 FunFam CDPK-related kinase 1 437 508 - -
Vvi16g1284 592 ProSitePatterns Protein kinases ATP-binding region signature. 145 171 IPR017441 GO:0005524
Vvi16g1284 592 MobiDBLite consensus disorder prediction 46 123 - -
Vvi16g1284 592 SUPERFAMILY Protein kinase-like (PK-like) 137 425 IPR011009 -
Vvi16g1284 592 FunFam CDPK-related kinase 1 132 227 - -
Vvi16g1284 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Vvi16g1284 592 Gene3D - 440 508 - -
Vvi16g1284 592 ProSiteProfiles Protein kinase domain profile. 139 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1284 592 CDD STKc_CAMK 138 400 - -
Vvi16g1284 592 FunFam CDPK-related kinase 3 131 303 - -
Vvi16g1284 592 MobiDBLite consensus disorder prediction 58 74 - -
Vvi16g1284 592 PANTHER SERINE/THREONINE-PROTEIN KINASE 118 545 - -
Vvi16g1284 592 SUPERFAMILY EF-hand 427 578 IPR011992 -
Vvi16g1284 592 Gene3D - 418 574 - -
Vvi16g1284 592 MobiDBLite consensus disorder prediction 103 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1284 Vvi-Chr16 21385096 21390551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1284 44 585 EF-hand Containing Proteins AT3G50530 60.997 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi16g1284 Pkinase 2.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1284 - - vvi:100246879 1166.76