Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1279 ATGGTGCTTTTCTTTGAATCAAAGCTAAAACCCTCTCAATTTTTTATCAAGAAGTTGCAGAAAACGACCAAATTCGACACGTTGAATTCGTTTCTTTATGGTTTTTGCCATTTCCTACTACTCCCCATAAGGTCATCAGCTGGCATCCCCACAGTTTCAAGAATGGCTGTGGAAAACCATCAGCAGAAAGCAGTGGCAGCCTCCCATAAGCATTTGCTCTCCCTTGATCTCAGCATCAACAACTTCACTGGTGGAATCCCTCAGCTGCTGGGAAACTGCAGCCGACTGAGTACGATTCTCCTTAATGACAATGGCCTCCAAGGATCAATCCCTGCTCAGATTTTCTCAAAGCAGCTGTTAGAACTCAACTTGGGGACTAACTTGCTCTGGGGTACGATTCCTTCTGAGGTAAGATTATGCAGGAATCTTGAATATTTAGGACTGTACAACAATTTCTTATCTGGGGAGATTCCAAGAGAATTATTCTCTCTACCAAAGCTGAAGTTTCTGTATTTGAACACCAATAATCTCACTGGAACTTTACCAAACTTCCCACCATCATGTGCCATTTCTGATCTTTGGATTCATGAGAATGCTCTCTCTGGATCTTTACCTCATTCTCTGGGAAACTGCAGAAACCTCACTATGTTCTTTGCATCTTATAACAACTTTGGAGGGATCATTCCACCAGAGATCTTCAAAGGTCTGGTGCAGCTTGAATTTCTCTATCTTGATTCCAACAAACTTGAGGGGCAGATCCCAGAGACTTTGTGGGGTCTTGGGGAGTTAAAAGAGCTTGTTCTTTCGGGGAATATGCTTAATGGGAGAATACCTGAAAGGATAGCTCAATGCCATCAGCTAGCTGTTCTATCACTCTCGACTAATAATCTGGTTGGGCAGATTCCTCCATCAATTGGAAGTCTCAAAGATCTATACTTTGTTTCTCTCTCTGATAACATGCTTCAAGGCTCATTGCCTCCAGAGGTTGGAAATTGTAGTTCTCTAGTTGAACTTAGGCTCCAGAACAACTTGATTGAAGGGAGAATCCCCTCAGAAGTCTGCAAACTTGAGAATCTTGAGGTATTTCACTTGTTCAACAATCATATCAAGGGCCGAATTCCTCAGCAGATAGGAAGAATGAGCAACCTTGTGGAGTTGGCTCTGTATAACAATAGCTTGACTGGTAGAATTCCATCAGGGATTACCCATTTGAAAAAACTCACATTCCTGTCCTTAGCGGACAATAATCTCACTGGGGAGGTGCCTTCTGAGATTGGGAGAAACAACTCTCCTGGTCTAGTTAAGTTGGATTTAACTGGGAATCGCCTTTATGGACTGATTCCTTCATATATATGCAGTGGCAATAGCCTTTCAGTTTTGGCTCTTGGAAACAATAGTTTCAATGGGACTTTTCCAGTTGAACTTGGAAAATGCTCTTCTCTTAGGAGAGTGATTCTTAGTTATAATCTTCTGCAAGGGAGTATACCAGCAGAATTGGATAAGAACCCAGGAATTTCTTTCTTAGACGCTCGAGGAAACTTGCTGGAAGGCAGCATACCCCCAGTGGTTGGTTCTTGGAGCAACCTCTCAATGCTTGATCTTTCAGAAAATAGGCTATCTGGCTCTATACCTCCTGAGCTTGGAATGCTGGGAAATCTTCAAATGTTACTACTTTCTTCAAACAGACTGAATGGAAGCATTCCTCCTGAGCTGGGGTATTGCTCACAAATGATCAAAATGGACCTCAGCAAGAACTCTCTCAGAGGAAACATTCCTTCAGAGATCACTTCATTTGTGGCCCTGCAGAACCTTCTCCTTCAAGACAACAACCTCAGTGGAGTGATTCCAGACTCATTCTCTTCACTAGAGAGTCTCTTTGACTTGCAGCTTGGAAACAACATGCTTGAAGGCTCTATCCCTTGCAGCTTAGGCAAACTTCACCAGCTCAATTCAGTACTTAACCTGAGCCACAATATGCTCTCTGGTGAAATCCCCAGATGCCTCAGCGGTTTAGACAAGTTACAGATTCTTGATCTCTCAAGCAACAATTTCTCTGGAACGATTCCGCCTGAACTGAACAGCATGGTGTCCCTTTCCTTTGTGAACATATCATTCAACCATCTCTCTGGGAAAATACCAGATGCCTGGATGAAATCAATGGCTTCATCTCCAGGGTCTTATCTAGGAAACCCAGAACTCTGCCTGCAGGGAAATGCAGATAGAGATAGTTATTGTGGGGAAGCAAAAAACTCCCATACAAAAGGCCTAGTGCTGGTTGGCATCATTCTAACTGTGGCGTTCTTTATAGCATTACTCTGTGCTGCAATTTATATAACCTTGGATCATCGACTCAGGCAGCAACTTTCCTCCCAGACTCGATCTCCTCTTCATGAGTGCCGATCAAAGACTGAGGATTTGCCCGAGGATTTGAAACTAGAAGATATTATAAAGGCGACAGAAGGGTGGAATGATAGGTATGTGATTGGAAGAGGCAAGCATGGAACTGTTTACAGGACAGAAACTGAGAACTCCAGAAGGAACTGGGCTGTGAAGAAGGTGGATTTGTCTGAGACAAACTTCAGCATTGAGATGAGGACTTTGAGCTTGGTTAGGCACAGAAATGTTGTGAGAATGGCAGGATATTGCATCAAAGATGGCTATGGTTTCATTGTGACCGAGTATATGGAAGGTGGGACCCTCTTTGATGTGCTGCATTGGAGAAAACCTCTGCATACGAACTTCCCTACTCCATTGATCTATAAGACTGACCATCAGAAGCTTACCTCTCTGAATTCTTTATCTTCTCCTCGTGTTCCAGAAAATGGACACTCAACCCGGTTGACAGAGAAATGTGATGTGTACAGCTATGGAGTCATTTTGCTAGAGCTTCTCTGCAGAAAACTGCCAGTGGACCCTTCCTTTGAAGAAGGCCTGGATATTGCGTCCTGGACAAGGAAGAACTTGCAGGAGAACAATGAATGCTGCAGCTTCCTTGATGTGGAAATTGGTTCCTGGAATGTAGATGAACAATGGAAGGCATTGAAGCTGCTGGAGTTGGCACTGGATTGCACTGAACTGGAGCCTGGCATAAGGCCCTCTATGAGAGATGTAGTGGGATATCTTATAAAGTTGAATGATAAACAAGAAGGAACTGTACACACCAGAGACAATTCAGGTTCTTAA 3183 0.4342 MVLFFESKLKPSQFFIKKLQKTTKFDTLNSFLYGFCHFLLLPIRSSAGIPTVSRMAVENHQQKAVAASHKHLLSLDLSINNFTGGIPQLLGNCSRLSTILLNDNGLQGSIPAQIFSKQLLELNLGTNLLWGTIPSEVRLCRNLEYLGLYNNFLSGEIPRELFSLPKLKFLYLNTNNLTGTLPNFPPSCAISDLWIHENALSGSLPHSLGNCRNLTMFFASYNNFGGIIPPEIFKGLVQLEFLYLDSNKLEGQIPETLWGLGELKELVLSGNMLNGRIPERIAQCHQLAVLSLSTNNLVGQIPPSIGSLKDLYFVSLSDNMLQGSLPPEVGNCSSLVELRLQNNLIEGRIPSEVCKLENLEVFHLFNNHIKGRIPQQIGRMSNLVELALYNNSLTGRIPSGITHLKKLTFLSLADNNLTGEVPSEIGRNNSPGLVKLDLTGNRLYGLIPSYICSGNSLSVLALGNNSFNGTFPVELGKCSSLRRVILSYNLLQGSIPAELDKNPGISFLDARGNLLEGSIPPVVGSWSNLSMLDLSENRLSGSIPPELGMLGNLQMLLLSSNRLNGSIPPELGYCSQMIKMDLSKNSLRGNIPSEITSFVALQNLLLQDNNLSGVIPDSFSSLESLFDLQLGNNMLEGSIPCSLGKLHQLNSVLNLSHNMLSGEIPRCLSGLDKLQILDLSSNNFSGTIPPELNSMVSLSFVNISFNHLSGKIPDAWMKSMASSPGSYLGNPELCLQGNADRDSYCGEAKNSHTKGLVLVGIILTVAFFIALLCAAIYITLDHRLRQQLSSQTRSPLHECRSKTEDLPEDLKLEDIIKATEGWNDRYVIGRGKHGTVYRTETENSRRNWAVKKVDLSETNFSIEMRTLSLVRHRNVVRMAGYCIKDGYGFIVTEYMEGGTLFDVLHWRKPLHTNFPTPLIYKTDHQKLTSLNSLSSPRVPENGHSTRLTEKCDVYSYGVILLELLCRKLPVDPSFEEGLDIASWTRKNLQENNECCSFLDVEIGSWNVDEQWKALKLLELALDCTELEPGIRPSMRDVVGYLIKLNDKQEGTVHTRDNSGS* 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1279 1060 Gene3D Ribonuclease Inhibitor 355 428 IPR032675 -
Vvi16g1279 1060 FunFam Receptor-like protein kinase HSL1 373 428 - -
Vvi16g1279 1060 SUPERFAMILY L domain-like 524 716 - -
Vvi16g1279 1060 ProSiteProfiles Leucine-rich repeat profile. 528 550 IPR001611 GO:0005515
Vvi16g1279 1060 Gene3D Ribonuclease Inhibitor 429 740 IPR032675 -
Vvi16g1279 1060 Gene3D Ribonuclease Inhibitor 187 354 IPR032675 -
Vvi16g1279 1060 Gene3D Ribonuclease Inhibitor 64 186 IPR032675 -
Vvi16g1279 1060 SMART LRR_typ_2 260 284 IPR003591 -
Vvi16g1279 1060 SMART LRR_typ_2 550 574 IPR003591 -
Vvi16g1279 1060 SMART LRR_typ_2 646 670 IPR003591 -
Vvi16g1279 1060 SMART LRR_typ_2 598 621 IPR003591 -
Vvi16g1279 1060 SMART LRR_typ_2 236 259 IPR003591 -
Vvi16g1279 1060 SMART LRR_typ_2 404 428 IPR003591 -
Vvi16g1279 1060 SMART LRR_typ_2 356 380 IPR003591 -
Vvi16g1279 1060 SMART LRR_typ_2 671 695 IPR003591 -
Vvi16g1279 1060 SMART LRR_typ_2 308 332 IPR003591 -
Vvi16g1279 1060 SMART LRR_typ_2 164 186 IPR003591 -
Vvi16g1279 1060 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 456 1036 - -
Vvi16g1279 1060 SUPERFAMILY L domain-like 253 543 - -
Vvi16g1279 1060 ProSitePatterns Protein kinases ATP-binding region signature. 828 852 IPR017441 GO:0005524
Vvi16g1279 1060 FunFam Leucine-rich repeat family protein 456 745 - -
Vvi16g1279 1060 SUPERFAMILY L domain-like 69 350 - -
Vvi16g1279 1060 ProSiteProfiles Protein kinase domain profile. 822 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1279 1060 FunFam Leucine-rich receptor-like protein kinase family protein 280 372 - -
Vvi16g1279 1060 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 63 279 - -
Vvi16g1279 1060 PRINTS Leucine-rich repeat signature 671 684 - -
Vvi16g1279 1060 PRINTS Leucine-rich repeat signature 529 542 - -
Vvi16g1279 1060 Gene3D Phosphorylase Kinase; domain 1 782 894 - -
Vvi16g1279 1060 Gene3D Transferase(Phosphotransferase) domain 1 920 1059 - -
Vvi16g1279 1060 Pfam Leucine rich repeat 601 660 IPR001611 GO:0005515
Vvi16g1279 1060 Pfam Leucine rich repeat 228 273 IPR001611 GO:0005515
Vvi16g1279 1060 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 783 894 - -
Vvi16g1279 1060 Pfam Protein kinase domain 826 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1279 1060 SUPERFAMILY Protein kinase-like (PK-like) 812 1045 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1279 Vvi-Chr16 21357596 21361368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1279 396 713 Receptor kinase-like Gene Family AT1G73080 31.694 1.75e-33 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi16g1279 Pkinase 9.6e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1279 - - vvi:100245296 1865.51