Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1278 ATGGCGGCATCTTTGGGCTTCCCTTTTACAAGTGCTCAGTGGAAGGAGCTTGAGAGACAAGCTATGATTTACAAGTACATAATGGCCTCTGTTCCTGTTCCTCCTGAACTCCTCATGCCCATTACCAGAAATTTCTCTGAGTCTGCTGCTTCCCCCCACTCTACCTTGGGGAGGGGTTCTATCTTCAACCTCCGTTTCTCTAATGGCGCAGATCCAGAGCCAGGGAGATGCCGAAGAACAGATGGGAAGAAATGGCGGTGCTCAAGAGATGTGGCACTCAATCAGAAGTACTGTGAACGGCACATGCACAGAGGCCGACCCCGTTCAAGAAAGCCTGTGGAAGTTCATGCCGACGTCAACAGTAGCCACAAGAAGACCCGCCATTGCCATGCTCTTCCTGCAACTCCTGCAACTCTTTCTAGCCCCATGCTAACCAACACTTCTTGTTCTCAATCGCAGTATCTTGGATCTGCCCTTGACCCACGCCATCAAAGCCCTGTTTTTCTCTATAAATCTGATTCTAAAGCTTCACCCTTTACGCCTCTTGTCTCTGTTCCATCATTCAAGGAAACTAGGAGCTTGGAGTGGATGGCCAAAGGAGAAGCAGCTCCCATGGCTACAAGTGATCAACAGTGGCAGCAGTTGATGCAGACCAAAATAGGATTGACAATAGAGAGCTCCAGCTCCATTTGTAATTCTAATGCCTCAGTTTTTAACCAGCAGTACCAAGAAGAGCCCATAAATTTGAACTCATATACAGATTTCAGTGCCGGAGCAGATAATCCAGGGAGGGATTCAATCAATATGTTCCTCAACCCAGGTGTTATCTCCTTACAAAAGCCCCAGACTGAAACCCCAAGAGCTTTCATTGATGCCTGGTCGAGTGCAGTCACTGAAAACCCTGCAAATACGTGCAACAAGAGCTCTGTTTCTTCCAATGGGAAGCTCCCATTGTCTTCCCTCACTCTCTCAATGGGCGGTGACAATGGAATTGAGAACGAAATGGGTCGTACTGAGATGGGTTTGAGGATAGTCGATTCCGGAGGAGGCGGCTGTGAAAAGCCTCAGCTCTCAACCTGGCTGACCCCTGCTTCTTGGGCAGGGTTGGCACCAGGTGGGCCATTAGCAGAAGTGCTGCGACCGAGCTCGGTTGCAGCAGCCTCAAATCCAGCATCTCCCCATGGTGGCAATGGTGATTCTATTAGCCTATCTGAGACTGCAGCCTCATCCCCATCGGGGGTTCTCCAGAAACCAGTGGTATCCCCATCTGATAGCAGTGGTAACAGCAGCCCAACACTCACTGCTTCACCAGCCAAACCAGAGATCACTTTCCCATGGCTGAATCAGAGCAAGGTAGCATCTGCTGAATGA 1371 0.4982 MAASLGFPFTSAQWKELERQAMIYKYIMASVPVPPELLMPITRNFSESAASPHSTLGRGSIFNLRFSNGADPEPGRCRRTDGKKWRCSRDVALNQKYCERHMHRGRPRSRKPVEVHADVNSSHKKTRHCHALPATPATLSSPMLTNTSCSQSQYLGSALDPRHQSPVFLYKSDSKASPFTPLVSVPSFKETRSLEWMAKGEAAPMATSDQQWQQLMQTKIGLTIESSSSICNSNASVFNQQYQEEPINLNSYTDFSAGADNPGRDSINMFLNPGVISLQKPQTETPRAFIDAWSSAVTENPANTCNKSSVSSNGKLPLSSLTLSMGGDNGIENEMGRTEMGLRIVDSGGGGCEKPQLSTWLTPASWAGLAPGGPLAEVLRPSSVAAASNPASPHGGNGDSISLSETAASSPSGVLQKPVVSPSDSSGNSSPTLTASPAKPEITFPWLNQSKVASAE* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1278 456 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi16g1278 456 MobiDBLite consensus disorder prediction 386 456 - -
Vvi16g1278 456 Pfam WRC 72 114 IPR014977 -
Vvi16g1278 456 ProSiteProfiles WRC domain profile. 71 115 IPR014977 -
Vvi16g1278 456 PANTHER GROWTH-REGULATING FACTOR 5 8 314 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vvi16g1278 456 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi16g1278 456 MobiDBLite consensus disorder prediction 386 437 - -
Vvi16g1278 456 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1278 Vvi-Chr16 21346760 21348557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1278 8 155 GRF Transcription Factor Family AT4G37740 51.007 7.47e-41 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vvi16g1278 WRC 9.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1278 - - vvi:100250422 904.049