Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1277 ATGGGGAAGATTGGTGGAGCTGGATCCTGGTTGACTGCAGTGAAGAGGGCCTTCAGGTCTCCAAGTAAGAGAGAAGAACATGAACAAGAGGAAGAAGAAAAGAAGCGGGGAAAACGAAGATGGATTTTTCGGAAACATTCCAACAACAACGAGACCGGCGTACAACTCTGTGAAACAAGGACTATAACCACCAGAGCCAATTCTGCAGAGACCACCGGCACTGCGAGAATGGCTAAAAATCCGGTTTCTGAGGCTGCTGACGCTGAGAAAAGGCATGCCATTGCAGTGGCAATGGCGACGGCAGCCGCCGCCGAGGCAGCAGTTGCGACGGCGAAAGCAGCGGTGGAGGTTGCTCGCCTCACTAGGCGGCCTTCCATCTTCGTTAGAGAACACTGTGCTGCCATTGTTATTCAGACCGCATTCAGAGGCTATCTGGCAAGGAAGGCTCTTCGGGCGCTCAAAGGGCTGGTGAAGCTGCAGGCTTTGGTGAGAGGCCACAACGTCCGGAAGCGAGCAAAGAAGACTCTTCGCTGCATGCAAGCTCTGGTTCGGGTCCAAGCCCGGGTCTGTGATCAGCGCAAGAGACTCTCGCTCTCACACGAGGAGAAAATCGACTCCATATTCAGCGATCCTAGCAGCTTATGGGAGTCAAATCTTCTCAATAGAAAATCCATGTCTGCTTGGGATTGGGATGATCACCCACACACCAAGAAACGTGAAGAAGAGGCCCTTGCTCATGCCTTCGCCCACCAGATATGGAGATCGTCCAGAAAGGACCAGTACCATGCTAGTGAAGGAGAGCTTGAAGACAAACCAAGACGGCTCGATCGGCGGATGGTGACAAAGCATTGGGAGAGTACAGGCAGAAGCTCATGTGACCAAAGAGAGCACATAAAAACAGTTGAAGTGGACACCTCTCAGCCTTACTCCTACTCAACCCCCATCTTCCAGAGACCATTCCATCAGCCCCCATCTCCTATCACGCCCTCTCCATATAAGATCAAGCTTTTCCAAGCTCATTCAGCCAGCCCTCGATGCCATTCAGCTGCTCAGACACCGAAACTAGGCTCAATTTACTACCATGGAATGTGGTCAAGTAGCAGCGCCGGGGCTGCTGCAATGCCAAATTACATGGCCTCTACTGAATCAGCCAAGGCTCGGGCCCGGTCCCAGAGTGCACCACGCCAGAGGGCTTCAACCCCAGAGAGGGATAGACCAGGGTCGGCCAGAAAACGCCTTTCTTTCCCTGATCCTGACCCGTTCGGAGCCACTGGCATTGAGGGCGAAACTTTTGGTAGTAACTTTGAGGGCTCGAATGTGTCTTCCTGTTGTGAGGAGAGCCATGGTGATGAGATCAACATTCAACCAGTCATCTTGGGAAGGGGCTGA 1389 0.5284 MGKIGGAGSWLTAVKRAFRSPSKREEHEQEEEEKKRGKRRWIFRKHSNNNETGVQLCETRTITTRANSAETTGTARMAKNPVSEAADAEKRHAIAVAMATAAAAEAAVATAKAAVEVARLTRRPSIFVREHCAAIVIQTAFRGYLARKALRALKGLVKLQALVRGHNVRKRAKKTLRCMQALVRVQARVCDQRKRLSLSHEEKIDSIFSDPSSLWESNLLNRKSMSAWDWDDHPHTKKREEEALAHAFAHQIWRSSRKDQYHASEGELEDKPRRLDRRMVTKHWESTGRSSCDQREHIKTVEVDTSQPYSYSTPIFQRPFHQPPSPITPSPYKIKLFQAHSASPRCHSAAQTPKLGSIYYHGMWSSSSAGAAAMPNYMASTESAKARARSQSAPRQRASTPERDRPGSARKRLSFPDPDPFGATGIEGETFGSNFEGSNVSSCCEESHGDEINIQPVILGRG* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1277 462 ProSiteProfiles IQ motif profile. 154 181 IPR000048 GO:0005515
Vvi16g1277 462 MobiDBLite consensus disorder prediction 383 397 - -
Vvi16g1277 462 ProSiteProfiles IQ motif profile. 130 158 IPR000048 GO:0005515
Vvi16g1277 462 MobiDBLite consensus disorder prediction 382 432 - -
Vvi16g1277 462 Gene3D - 129 182 - -
Vvi16g1277 462 MobiDBLite consensus disorder prediction 1 38 - -
Vvi16g1277 462 PANTHER IQ-DOMAIN 5-RELATED 1 416 - -
Vvi16g1277 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 176 IPR027417 -
Vvi16g1277 462 MobiDBLite consensus disorder prediction 18 38 - -
Vvi16g1277 462 Pfam IQ calmodulin-binding motif 157 173 IPR000048 GO:0005515
Vvi16g1277 462 Pfam IQ calmodulin-binding motif 131 151 IPR000048 GO:0005515
Vvi16g1277 462 SMART iq_5 129 151 IPR000048 GO:0005515
Vvi16g1277 462 SMART iq_5 152 173 IPR000048 GO:0005515
Vvi16g1277 462 MobiDBLite consensus disorder prediction 398 412 - -
Vvi16g1277 462 Pfam Protein of unknown function (DUF4005) 347 428 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1277 Vvi-Chr16 21341512 21343257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1277 1 453 IQD Protein Family AT1G01110 43.364 2.41e-99 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1277 - - vvi:100255609 844.728