Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1274 ATGGCGGTTGTGGAGAATGCTGGAAATAAAGTGGGGTCGTCGAGTGCGAATTCTGAGAGTGCGGACACCAACGATTTTGGTCAATCGCAGCCGAGTAATCACACAGTTATGCAGAATTTGCAGCAGAAGAACACTAATAGCAAACCGATTTTGCTGCCAAATGATGAAAACTATTACTCGCAGAAGATACCCCAATTTCAGCAGAAAGCGGGGAGCAACGGAGTGGCCAAGATTCAGATGGTGGGGAGTTTCGGAAGAGATAGAGAAGATGGTGGGGATATTAGGGATTTGGAGGACCTTCTCTCCAAGTTGAACCCCATGGCCGAAGAATTTGTTCCACCTTCTCTCGCAAATGGCCATGGATGGTCTGCTGGTGCTGCTTTTGGATACACTAACAACTTTGTATTGCAGGCTAATTTTGGCAATGCAAATGGGAATGCTGGTAGACGGAAGAGGAACAATTATAATCAGAAGCGGAGAATCAACAGCCGAACCAGCATGGCACAGCGGGAGGAAGTGATTAAGAGGACAGTATATGTGTCTGACATTGATCAGCAGGTCACTGAGGAAGATCTTGCTGCTCTTTTTATCAATTGTGGCCAGGTTGTTGACTGTCGTATATGTGGTGATCCTAATTCCGTTCTCCGATTTGCCTTCGTTGAATTTACTGATGAGGAAGGCGCGCGGGCTGCTCTGAGTTTGGCGGGAACAATGCTTGGGTATTATCCAGTGAGAGTGCTACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGGTCTGAAGATGAACGTGAAATGTGCGCCAGGACTATTTACTGTACAAATATTGATAAGAAGGTGACCCAGGCAGAAGTCAAACTTTTCTTTGAATCAATTTGTGGAGAGGTTCATCGCTTGAGGCTGCTTGGAGACTATCATCACTCTACTCGAATTGCTTTTGTCGAGTTTGTAATGGCCGAGAGTGCAATTGCAGCCCTTAACTGTAGCGGCGCCATTTTAGGATCCCTGCCTATAAGAGTCAGCCCATCAAAGACGCCTGTCAGGCCACGAGCTCCTCGCCCGGCCTTGCATTGA 1086 0.4687 MAVVENAGNKVGSSSANSESADTNDFGQSQPSNHTVMQNLQQKNTNSKPILLPNDENYYSQKIPQFQQKAGSNGVAKIQMVGSFGRDREDGGDIRDLEDLLSKLNPMAEEFVPPSLANGHGWSAGAAFGYTNNFVLQANFGNANGNAGRRKRNNYNQKRRINSRTSMAQREEVIKRTVYVSDIDQQVTEEDLAALFINCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCARTIYCTNIDKKVTQAEVKLFFESICGEVHRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGAILGSLPIRVSPSKTPVRPRAPRPALH* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1274 361 CDD RRM2_CID8_like 269 350 IPR034825 -
Vvi16g1274 361 SUPERFAMILY RNA-binding domain, RBD 162 252 IPR035979 GO:0003676
Vvi16g1274 361 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 100 354 - -
Vvi16g1274 361 FunFam Polyadenylate-binding protein-interacting protein 10 267 345 - -
Vvi16g1274 361 CDD RRM1_CID8_like 174 253 IPR034823 -
Vvi16g1274 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 240 IPR000504 GO:0003723
Vvi16g1274 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 275 342 IPR000504 GO:0003723
Vvi16g1274 361 MobiDBLite consensus disorder prediction 8 33 - -
Vvi16g1274 361 Gene3D - 260 355 IPR012677 -
Vvi16g1274 361 Gene3D - 139 253 IPR012677 -
Vvi16g1274 361 SMART rrm1_1 274 345 IPR000504 GO:0003723
Vvi16g1274 361 SMART rrm1_1 177 247 IPR000504 GO:0003723
Vvi16g1274 361 Pfam Ataxin-2 C-terminal region 102 115 IPR009818 -
Vvi16g1274 361 MobiDBLite consensus disorder prediction 1 33 - -
Vvi16g1274 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 273 349 IPR000504 GO:0003723
Vvi16g1274 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 251 IPR000504 GO:0003723
Vvi16g1274 361 FunFam Polyadenylate-binding protein-interacting protein 11 140 253 - -
Vvi16g1274 361 SUPERFAMILY RNA-binding domain, RBD 264 355 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1274 Vvi-Chr16 21323206 21327419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1274 178 330 Eukaryotic Initiation Factors Gene Family AT1G34140 24.359 1.86e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1274 - - vvi:100245327 688.337