Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi16g1274 | ATGGCGGTTGTGGAGAATGCTGGAAATAAAGTGGGGTCGTCGAGTGCGAATTCTGAGAGTGCGGACACCAACGATTTTGGTCAATCGCAGCCGAGTAATCACACAGTTATGCAGAATTTGCAGCAGAAGAACACTAATAGCAAACCGATTTTGCTGCCAAATGATGAAAACTATTACTCGCAGAAGATACCCCAATTTCAGCAGAAAGCGGGGAGCAACGGAGTGGCCAAGATTCAGATGGTGGGGAGTTTCGGAAGAGATAGAGAAGATGGTGGGGATATTAGGGATTTGGAGGACCTTCTCTCCAAGTTGAACCCCATGGCCGAAGAATTTGTTCCACCTTCTCTCGCAAATGGCCATGGATGGTCTGCTGGTGCTGCTTTTGGATACACTAACAACTTTGTATTGCAGGCTAATTTTGGCAATGCAAATGGGAATGCTGGTAGACGGAAGAGGAACAATTATAATCAGAAGCGGAGAATCAACAGCCGAACCAGCATGGCACAGCGGGAGGAAGTGATTAAGAGGACAGTATATGTGTCTGACATTGATCAGCAGGTCACTGAGGAAGATCTTGCTGCTCTTTTTATCAATTGTGGCCAGGTTGTTGACTGTCGTATATGTGGTGATCCTAATTCCGTTCTCCGATTTGCCTTCGTTGAATTTACTGATGAGGAAGGCGCGCGGGCTGCTCTGAGTTTGGCGGGAACAATGCTTGGGTATTATCCAGTGAGAGTGCTACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGGTCTGAAGATGAACGTGAAATGTGCGCCAGGACTATTTACTGTACAAATATTGATAAGAAGGTGACCCAGGCAGAAGTCAAACTTTTCTTTGAATCAATTTGTGGAGAGGTTCATCGCTTGAGGCTGCTTGGAGACTATCATCACTCTACTCGAATTGCTTTTGTCGAGTTTGTAATGGCCGAGAGTGCAATTGCAGCCCTTAACTGTAGCGGCGCCATTTTAGGATCCCTGCCTATAAGAGTCAGCCCATCAAAGACGCCTGTCAGGCCACGAGCTCCTCGCCCGGCCTTGCATTGA | 1086 | 0.4687 | MAVVENAGNKVGSSSANSESADTNDFGQSQPSNHTVMQNLQQKNTNSKPILLPNDENYYSQKIPQFQQKAGSNGVAKIQMVGSFGRDREDGGDIRDLEDLLSKLNPMAEEFVPPSLANGHGWSAGAAFGYTNNFVLQANFGNANGNAGRRKRNNYNQKRRINSRTSMAQREEVIKRTVYVSDIDQQVTEEDLAALFINCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCARTIYCTNIDKKVTQAEVKLFFESICGEVHRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGAILGSLPIRVSPSKTPVRPRAPRPALH* | 362 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi16g1274 | 361 | CDD | RRM2_CID8_like | 269 | 350 | IPR034825 | - | |
Vvi16g1274 | 361 | SUPERFAMILY | RNA-binding domain, RBD | 162 | 252 | IPR035979 | GO:0003676 | |
Vvi16g1274 | 361 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR | 100 | 354 | - | - | |
Vvi16g1274 | 361 | FunFam | Polyadenylate-binding protein-interacting protein 10 | 267 | 345 | - | - | |
Vvi16g1274 | 361 | CDD | RRM1_CID8_like | 174 | 253 | IPR034823 | - | |
Vvi16g1274 | 361 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 178 | 240 | IPR000504 | GO:0003723 | |
Vvi16g1274 | 361 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 275 | 342 | IPR000504 | GO:0003723 | |
Vvi16g1274 | 361 | MobiDBLite | consensus disorder prediction | 8 | 33 | - | - | |
Vvi16g1274 | 361 | Gene3D | - | 260 | 355 | IPR012677 | - | |
Vvi16g1274 | 361 | Gene3D | - | 139 | 253 | IPR012677 | - | |
Vvi16g1274 | 361 | SMART | rrm1_1 | 274 | 345 | IPR000504 | GO:0003723 | |
Vvi16g1274 | 361 | SMART | rrm1_1 | 177 | 247 | IPR000504 | GO:0003723 | |
Vvi16g1274 | 361 | Pfam | Ataxin-2 C-terminal region | 102 | 115 | IPR009818 | - | |
Vvi16g1274 | 361 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Vvi16g1274 | 361 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 273 | 349 | IPR000504 | GO:0003723 | |
Vvi16g1274 | 361 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 176 | 251 | IPR000504 | GO:0003723 | |
Vvi16g1274 | 361 | FunFam | Polyadenylate-binding protein-interacting protein 11 | 140 | 253 | - | - | |
Vvi16g1274 | 361 | SUPERFAMILY | RNA-binding domain, RBD | 264 | 355 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi16g1274 | Vvi-Chr16 | 21323206 | 21327419 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi16g1274 | 178 | 330 | Eukaryotic Initiation Factors Gene Family | AT1G34140 | 24.359 | 1.86e-08 | 53.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi16g1274 | - | - | vvi:100245327 | 688.337 |